1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtgtttggaccaaacttcctgtactcattacacatatagattgccttgacaagaatattttgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCATCTATCACCATGTAGTTGGTGGTGTTCTAAATCCG
species | Oryza sativa |
transcript | LOC_Os03g25940.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|12622757|gb|AU172970.1|AU172970
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|29614165|gb|CB619178.1|CB619178
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCCAAGTCCGCEST: gi|29673041|gb|CB669316.1|CB669316
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: GTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|29614913|gb|CB619926.1|CB619926
genomic: GTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|38478380|gb|CF962513.1|CF962513
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATCGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|29660677|gb|CB656952.1|CB656952
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|58612841|gb|CK040553.1|CK040553
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTCTTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|58695584|gb|CK084271.1|CK084271
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|29625315|gb|CB630326.1|CB630326
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|58596991|gb|CK007519.1|CK007519
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCGGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|58612205|gb|CK039917.1|CK039917
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAEST: gi|218484474|gb|FG954293.1|FG954293
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCA
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|428295|gb|D24443.1|D24443
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|88397733|gb|CI684672.1|CI684672
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|29660676|gb|CB656951.1|CB656951
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|29639161|gb|CB644170.1|CB644170
genomic: CTGACTTAGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: AGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCEST: gi|29614166|gb|CB619179.1|CB619179
genomic: AGTTATCCATTCAGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
EST: AGCAACAAAGTACATTGCTGGGCACAATGAT GTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
genomic: AGCAACAAAGTACATTGCTGGGCACAATGATgtaagtgttt ... tgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGC
ttcctgtactcattacacatatagattgccttgacaagaatattttgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCATCTATCACCATGTAGTTGGTGGTGTTCTAAATCCG
ccttgac putative branch site (score: 95)
ttttgtttttt putative PPT
acaagaatattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtttggaccaaacttcctgtactcattacacatatagattgccttgacaagaatattttgttttttagGTTATTGGAGGCTGCATCAGTGGCAGAGATGAGCTAGTTTCCAAAGTCCGCATCTATCACCATGTAGTTGGTGGTGTTCTAAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG