1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
species | Oryza sativa |
transcript | LOC_Os03g19510.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|33682025|gb|CF310264.1|CF310264
genomic: GACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: GATGTTTCCACATTTTGTATTGGACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|218500705|gb|FG952597.1|FG952597
genomic: GATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: AA-C-TATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|44675627|gb|CR289061.1|CR289061
genomic: AAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: ATGC-TATCAGACCTGATG-TTCCACAGTTTGTATTGGACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|33682024|gb|CF310263.1|CF310263
genomic: AAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: AAGCATATCAGACCTGATGTTTCCACATTTTGTATTGGACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|86596355|gb|CI268655.1|CI268655
genomic: AAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: CCACAGTTTGTATTGGACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|8858878|gb|AU096196.1|AU096196
genomic: CCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: AAGCATATCAGACNTGATGTTTCCCCAGTTTGTATTGGCCTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|33801418|gb|CF326580.1|CF326580
genomic: AAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: AAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|88832375|gb|CI019316.1|CI019316
genomic: AAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: AAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|86423150|gb|CI060723.1|CI060723
genomic: AAGCATATCAGACCTGATGTTTCCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: GACTTGCTGCAAG TAT-GGAGCTTTTCTGCTTAGTGCTGGGACAAAAGEST: gi|86413585|gb|CI019170.1|CI019170
genomic: GACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
EST: GTTTCCACAGTTTGTATTGGACTTGCTGCAAG TATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
genomic: GTTTCCACAGTTTGTATTGGACTTGCTGCAAGgtatttagta ... tttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
tgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
cattgat putative branch site (score: 17)
ctcattttcactgttt putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttggaatgctctcttttagctatccatcttgccttaagttgcattgatttcggttatgcactcattttcactgttttgtttccctttttggcagTATGGGAGCTTTTCTGCTTAGTGCTGGGACAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - ggaatgc
- - - - - - - - - - - - - - - - -cttgcct
- - - - - - - - - - - - - - - - - - - - - - -tgcattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca