1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cgaaagttacagtatttgcacggaataaacctttttccccggtacggcttaaaagttaatcagcttctcataccgctgaagcgtttgtttgttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTGGTGGGCACAGCGGTTCTAGCACTGTTCTTGCTGATCAGCCTCATCACC
species | Oryza sativa |
transcript | LOC_Os03g11614.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGNEST: gi|86822847|gb|CI251887.1|CI251887
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGG-
EST: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|5004673|gb|AU069848.1|AU069848
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|89167327|gb|CI252858.1|CI252858
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: GAGCAACAGCTGCAAGATCTCAACTAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|163925591|gb|EG710756.1|EG710756
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: ATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|87029597|gb|CI257392.1|CI257392
genomic: ATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: CTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|8857332|gb|AU094650.1|AU094650
genomic: CTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|7378312|gb|AU088583.1|AU088583
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|86493995|gb|CI136628.1|CI136628
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|58602799|gb|CK013327.1|CK013327
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: GACCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTEST: gi|32948430|gb|BP185002.1|BP185002
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
EST: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAG TTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
genomic: GAGCAACAGCTGCAAGATCTCAACAAAGACTTGAGGAAAAAGgtaacacagc ... gttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGT
ggcttaaaagttaatcagcttctcataccgctgaagcgtttgtttgttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTGGTGGGCACAGCGGTTCTAGCACTGTTCTTGCTGATCAGCCTCATCACC
agttaat putative branch site (score: 268)
tttgttc putative PPT
aaaagttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaaagttacagtatttgcacggaataaacctttttccccggtacggcttaaaagttaatcagcttctcataccgctgaagcgtttgtttgttcgtgcagTTACAGGAAACCAGTGCAGAGAATGTGCTCCATATGTCCTGGCAAGATGGTGGTGGGCACAGCGGTTCTAGCACTGTTCTTGCTGATCAGCCTCATCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - tgcacgg
- - - - - - - - - - - -aataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaagc