1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...actgttatcatcaaatttaatcgtgaagataagcagatatcttgctttttttgttactttattcaggagattttgtgtctcatagaactttgttacgtagGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAAC
species | Oryza sativa |
transcript | LOC_Os03g01890.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGTTGCTGCCCGTGCCTGTGGTTGGGTGAACCTAGAACCAACAAAA GTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACEST: gi|29634707|gb|CB639716.1|CB639716
genomic: GTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAAgtaagtgttg ... tgttacgtagGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAAC
EST: GTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTANAACCAACAAAA GTGGTAGAGATATTGAAAGATCGTCCATCEST: gi|29642722|gb|CB647729.1|CB647729
genomic: GTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAAgtaagtgttg ... tgttacgtagGTGGTAGAGATATTGAAAGATCGTCCATC
EST: GTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAA GTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACEST: gi|58669023|gb|CK057709.1|CK057709
genomic: GTGGTGTTGCTGCCCGTGCCTGTGGTTTGGTGAACCTAGAACCAACAAAAgtaagtgttg ... tgttacgtagGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAAC
EST: TTTGGTGAACCTAGAACCAACAAAA GTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAAC
genomic: TTTGGTGAACCTAGAACCAACAAAAgtaagtgttg ... tgttacgtagGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAAC
tttttttgttactttattcaggagattttgtgtctcatagaactttgttacgtagGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAAC
ctttgtt CT-rich tract
ttactttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgttatcatcaaatttaatcgtgaagataagcagatatcttgctttttttgttactttattcaggagattttgtgtctcatagaactttgttacgtagGTGGTAGAGATATTGAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA