1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tagttctattttatactgacagcatagttgcttgttgtttccattgctgcccaatgtgttctttcagtgaatagttgtattccatccttaaccagttcagATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACAATGTAAAGATATAGAGCACTGTCGTGCCGAAATTAG
species | Oryza sativa |
transcript | LOC_Os03g01750.2 |
intron # | 6 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGA ATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACAATGTAAEST: gi|29680013|gb|CB676288.1|CB676288
genomic: GACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGAgtatccctat ... accagttcagATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACAATGTAA
EST: GACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGA ATATTTTGGAGTTGACATCTGCGCCATTCAAGAATATTGTCTACAATGTAAEST: gi|29641485|gb|CB646492.1|CB646492
genomic: GACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGAgtatccctat ... accagttcagATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACAATGTAA
EST: GACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGA ATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACCATGTAA
genomic: GACATTGGTGTAAAAACAGTATTCTGCCTGCAGCAAGATCCAGACCTTGAgtatccctat ... accagttcagATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACAATGTAA
gctgcccaatgtgttctttcagtgaatagttgtattccatccttaaccagttcagATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACAATGTAAAGATATAGAGCACTGTCGTGCCGAAATTAG
atccttaac putative branch site
aatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttctattttatactgacagcatagttgcttgttgtttccattgctgcccaatgtgttctttcagtgaatagttgtattccatccttaaccagttcagATATTTTGGAGTTGACATCTGTGCCATTCAAGAATATTGTCTACAATGTAAAGATATAGAGCACTGTCGTGCCGAAATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA