1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagccattgcagctattcagaattacagattctgcaccaataagtttgttttttttttaatttttcgtgccactccatatcttcctcatgctagccaatacaacttaggatatttctgataatctgaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTG
species | Oryza sativa |
transcript | LOC_Os02g53490.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAG GTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTEST: gi|218505618|gb|FG958833.1|FG958833
genomic: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAGgtcagccatt ... gaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATT
EST: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAG GTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTEST: gi|3767106|gb|AU031216.1|AU031216
genomic: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAGgtcagccatt ... gaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATT
EST: TGACACGGTTCGAGCTTACCAGCTTTTGGAGCTCCTCTANTTTGTCCGAG GTTGANATCGAGCTATCTGAEST: gi|58680016|gb|CK068703.1|CK068703
genomic: TGACACGGTTCGAGCTTAC-AGCTTT-GGAGCTC-TCTACTTTGTC-GAGgtcagccatt ... gaatacacagGTTGACATCGAGCTATCTGA
EST: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAG GTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTEST: gi|18386143|gb|BM419342.1|BM419342
genomic: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAGgtcagccatt ... gaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATT
EST: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAG GTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTEST: gi|218484389|gb|FG948820.1|FG948820
genomic: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAGgtcagccatt ... gaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATT
EST: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAG GTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTEST: gi|88217249|gb|CI217098.1|CI217098
genomic: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAGgtcagccatt ... gaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATT
EST: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAG GTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATT
genomic: GGGTTGACACGGTTCGAGCTTACAGCTTTGGAGCTCTCTACTTTGTCGAGgtcagccatt ... gaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATT
cttcctcatgctagccaatacaacttaggatatttctgataatctgaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTG
ttctgat putative branch site (score: 15)
atatttctgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagccattgcagctattcagaattacagattctgcaccaataagtttgttttttttttaatttttcgtgccactccatatcttcctcatgctagccaatacaacttaggatatttctgataatctgaatacacagGTTGACATCGAGCTATCTGAGGATATGCGCTTGGGTGAGGCGCACTCCATTGGTGAATCGCTGCAGGACAAGATCGAGAAGCTTCCAGAAGTTGAGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT