1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgatggctatggaagggcttcttcaattcaacaacaaaatgaattccttttgagctttggttgtctcttttatctcatttcaatgcttatgttgaaacagGTGACATCTTTCGCCGAAATACGCTCTTTCAGAGGAAGCCCATACTGGATGGCTCCTGAG
species | Oryza sativa |
transcript | LOC_Os02g35010.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGGCCCTAATGGTGAAGTCAAACTTGCGGACTTTGGCATGGCTAAACAT GTGACATCTTTCGCCGAAATACGCTCTTTCAGAGGAAGCCCATACTGGATGEST: gi|218486188|gb|FG948835.1|FG948835
genomic: TGGGCCCTAATGGTGAAGTCAAACTTGCGGACTTTGGCATGGCTAAACATgtatgcagtt ... gttgaaacagGTGACATCTTTCGCCGAAATACGCTCTTTCAGAGGAAGCCCATACTGGATG
EST: TGGGCCCTAATGGTGAAGTCAAACTTGCGGACTTTGGCATGGCTAAACAT GTGACATCTTTCGCCGAAEST: gi|38468550|gb|CF952681.1|CF952681
genomic: TGGGCCCTAATGGTGAAGTCAAACTTGCGGACTTTGGCATGGCTAAACATgtatgcagtt ... gttgaaacagGTGACATCTTTCGCCGAA
EST: TGGGCCCTAATGGTGAAGTCAAACTTGCGGACTTTGGCATGGCTAAACAT GTGACATCTTTCGCCGAAATACGCTCTTTCAGAGGAAGCCCATACTGGATG
genomic: TGGGCCCTAATGGTGAAGTCAAACTTGCGGACTTTGGCATGGCTAAACATgtatgcagtt ... gttgaaacagGTGACATCTTTCGCCGAAATACGCTCTTTCAGAGGAAGCCCATACTGGATG
ccttttgagctttggttgtctcttttatctcatttcaatgcttatgttgaaacagGTGACATCTTTCGCCGAAATACGCTCTTTCAGAGGAAGCCCATACTGGATGGCTCCTGAG
tcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatggctatggaagggcttcttcaattcaacaacaaaatgaattccttttgagctttggttgtctcttttatctcatttcaatgcttatgttgaaacagGTGACATCTTTCGCCGAAATACGCTCTTTCAGAGGAAGCCCATACTGGATGGCTCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
tgatggc
- - - - - - - -ggcttct
- - - - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctt