1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgttattctgtaacaaagttttttttttttgtggttgaaattgctgactttgtttttacctgatgcagacagtttgtagtaacaattgacaattcactatgatttgtttgctcaacatatagttgctgagaaattactttctttgcgtgcagCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACT
species | Oryza sativa |
transcript | LOC_Os02g32730.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAG CTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTACTGCAAAAGCTEST: gi|40724666|gb|CK431263.1|CK431263
genomic: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGgttcgttatt ... ttgcgtgcagCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCT
EST: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAG CTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTEST: gi|29629285|gb|CB634296.1|CB634296
genomic: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGgttcgttatt ... ttgcgtgcagCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCT
EST: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAG CTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTEST: gi|8856696|gb|AU094014.1|AU094014
genomic: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGgttcgttatt ... ttgcgtgcagCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCT
EST: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAG CTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTEST: gi|25803672|gb|CA759633.1|CA759633
genomic: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGgttcgttatt ... ttgcgtgcagCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCT
EST: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAG CTCACAGTAGCATCTATCAAGATGAGCAGACCAGAGATTGCTGCAAAAGCT
genomic: GCCTTGGTCATATCATAATGGAGGATCCTGGCCAACATTGTTATGGCAGgttcgttatt ... ttgcgtgcagCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCT
tatgatttgtttgctcaacatatagttgctgagaaattactttctttgcgtgcagCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACT
ttactttcttt CT-rich tract
aaattactttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttattctgtaacaaagttttttttttttgtggttgaaattgctgactttgtttttacctgatgcagacagtttgtagtaacaattgacaattcactatgatttgtttgctcaacatatagttgctgagaaattactttctttgcgtgcagCTCACAGTAGCATCTATCAAGATGAACAGACCAGAGATTGCTGCAAAAGCTGTAGAGGTAGCTGAGAGGCGAATTGCTATCGACAAATGGCCTGAATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG