1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagattatttcctattcagcatttttcttctttttttcttttgtttgagttctaacatatatgttctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATGCAAAGACTTGTGTCTTAAGTGGAAAATATTACATATATTATTCAGACG
species | Oryza sativa |
transcript | LOC_Os02g08120.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGT ATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATEST: gi|218478168|gb|FG952613.1|FG952613
genomic: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGTgtaagattat ... tctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACAT
EST: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGT ATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATEST: gi|51946147|gb|CV152488.1|CV152488
genomic: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGTgtaagattat ... tctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACAT
EST: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGT ATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATEST: gi|58689965|gb|CK078652.1|CK078652
genomic: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGTgtaagattat ... tctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACAT
EST: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGT ATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATEST: gi|58667942|gb|CK056628.1|CK056628
genomic: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGTgtaagattat ... tctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACAT
EST: GAAGACTTCCTTAGGCTCTGTGGTTCGAGATCCTCAGAAGTTGCGCAGT ATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATEST: gi|29668781|gb|CB665056.1|CB665056
genomic: GAAGACTTCCTTAGGCT-TGTGGTTCGAGATCCTCAGAAGTTGCGCAGTgtaagattat ... tctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACAT
EST: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGT ATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATEST: gi|569278|gb|D40127.1|D40127
genomic: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGTgtaagattat ... tctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACAT
EST: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGT ATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACAT
genomic: TTGAAGACTTCCTTAGGCTTGTGGTTCGAGATCCTCAGAAGTTGCGCAGTgtaagattat ... tctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACAT
catttttcttctttttttcttttgtttgagttctaacatatatgttctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATGCAAAGACTTGTGTCTTAAGTGGAAAATATTACATATATTATTCAGACG
ttctaac putative branch site (score: 16)
ttctgtccc putative PPT
tttttttcttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattatttcctattcagcatttttcttctttttttcttttgtttgagttctaacatatatgttctgtcccagATCCTTGGAAGTGGTATGTCTAATAAGATGTGGGATATTCTTGTCGAACATGCAAAGACTTGTGTCTTAAGTGGAAAATATTACATATATTATTCAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA