1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tattgattgtagtggttctggatgcaaccagagttcttgtgatttaattttgtcagaatatttgactgaagaaagatattgtctctaattgattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCATGGGTGACCAACATAAATTTGTTCAAGGAATACACAGACATTAGCAGG
species | Oryza sativa |
transcript | LOC_Os02g07350.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAG GTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCAEST: gi|55409778|gb|CV722154.1|CV722154
genomic: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAGgtaacttttt ... gattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
EST: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAG GTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCAEST: gi|29661946|gb|CB658221.1|CB658221
genomic: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAGgtaacttttt ... gattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
EST: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAG GTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCAEST: gi|29661947|gb|CB658222.1|CB658222
genomic: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAGgtaacttttt ... gattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
EST: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAG GTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCAEST: gi|66924326|gb|CX111174.1|CX111174
genomic: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAGgtaacttttt ... gattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
EST: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAG GTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCAEST: gi|94362390|gb|CI052303.1|CI052303
genomic: GTGGTGCTTATTGTAATGGGCAAAAGATTCATGTCAGTAAGACAGACAAGgtaacttttt ... gattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
EST: CATGTCAGTAAGACAGACAAG GTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCAEST: gi|88980653|gb|CI022366.1|CI022366
genomic: CATGTCAGTAAGACAGACAAGgtaacttttt ... gattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
EST: AAGATTCATGTCAGTAAGACAGACAAG GTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCAEST: gi|22306217|gb|BQ907439.1|BQ907439
genomic: AAGATTCATGTCAGTAAGACAGACAAGgtaacttttt ... gattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
EST: TTATTGTAATGGGCAAAAGGATTCATGTCAGTAAGACAGACAAG GTGGAACCATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
genomic: TTATTGTAATGGGCAAAA-GATTCATGTCAGTAAGACAGACAAGgtaacttttt ... gattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCA
aattttgtcagaatatttgactgaagaaagatattgtctctaattgattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCATGGGTGACCAACATAAATTTGTTCAAGGAATACACAGACATTAGCAGG
ttctct CT-rich tract
agaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgattgtagtggttctggatgcaaccagagttcttgtgatttaattttgtcagaatatttgactgaagaaagatattgtctctaattgattctctagGTGGAACAATCACTTCTGGTAACTGGTTTTGGTTATGAACATGATGATGCATGGGTGACCAACATAAATTTGTTCAAGGAATACACAGACATTAGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -tgattgt
- - - - - - - - - tggatgc
- - - - - - - - - - - - -aaccaga
- - - - - - - - - - - - - - - - - - ttgtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaga