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gtaagttctaacatttggttgagaaataagatgttctgaactgcaaatgattgtcctatgaagtagtggtaagagagcatataattccattttattaaccatgggcagCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTG
species | Oryza sativa |
transcript | LOC_Os01g54040.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCAGAACCGTTTTCGCCTTAGACACCGTTGGATCGATGCTGATGACGTT CAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAEST: gi|58659455|gb|CK048135.1|CK048135
genomic: GTCAGAACCGTTTTCGCCTTAGACGCCGTTGGATCGATGCTGATGACGTTgtaagttcta ... ccatgggcagCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCA
EST: GTCAGAACCGTTTTCGCCTTAGACACCGTTGGATCGATGCTGATGACGTT CAATGGGGTGAAGTACAAATTATCGAAGAAGAT-CACCTCAGAGAACTCCA
genomic: GTCAGAACCGTTTTCGCCTTAGACGCCGTTGGATCGATGCTGATGACGTTgtaagttcta ... ccatgggcagCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCA
tcctatgaagtagtggtaagagagcatataattccattttattaaccatgggcagCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTG
tattaac putative branch site (score: 1)
atataattccatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctaacatttggttgagaaataagatgttctgaactgcaaatgattgtcctatgaagtagtggtaagagagcatataattccattttattaaccatgggcagCAATGGGGTGAAGTACAAATTATCGAAGAAGATACACCTCAGAGAACTCCAAGAGATGCATTTGGCCAGTTAGCTACAAATTATATTTTCAACCAGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG