1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acaaaggttgtaagcaaaagaaatcagtgcaggtgagtcatacggtgttggcaagaggggtcaggatagtttattaatcgatttatttatcttcgagcagACATCCCGAAAAGCAAGGGTGGAAATTGAGATTTCGGAAGATTCGAAGTTTGCACGGTTCGACTTCAACGG
species | Oryza sativa |
transcript | LOC_Os01g48700.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCCAGCAGAAAGTGTTAATGGCATCCTCCTTCCGTTCTTATTGATCAAG ACATCCCGAAAAGCAAGGGTGGAAATTGAGATTTCGGAAGATTCGAAGTTTEST: gi|27546711|gb|CA764996.2|CA764996
genomic: GGCCAGCAGAAAGTGTTAATGGCATCCTCCTTCCGTTCTTATTGATCAAGgtagttgttc ... cttcgagcagACATCCCGAAAAGCAAGGGTGGAAATTGAGATTTCGGAAGATTCGAAGTTT
EST: GGCCAGCAGAAAGTGTTAATGGCATCCTCCTTCCGTTCTTATTGATCAAG ACATCCCGAAAAGCAAGGGTGGAAATTGAGATTTCGGAAGATTCAAAGTTT
genomic: GGCCAGCAGAAAGTGTTAATGGCATCCTCCTTCCGTTCTTATTGATCAAGgtagttgttc ... cttcgagcagACATCCCGAAAAGCAAGGGTGGAAATTGAGATTTCGGAAGATTCGAAGTTT
tgttggcaagaggggtcaggatagtttattaatcgatttatttatcttcgagcagACATCCCGAAAAGCAAGGGTGGAAATTGAGATTTCGGAAGATTCGAAGTTTGCACGGTTCGACTTCAACGG
tattaat putative branch site (score: 6)
tttatcttc putative PPT
atagtttattaatcga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaggttgtaagcaaaagaaatcagtgcaggtgagtcatacggtgttggcaagaggggtcaggatagtttattaatcgatttatttatcttcgagcagACATCCCGAAAAGCAAGGGTGGAAATTGAGATTTCGGAAGATTCGAAGTTTGCACGGTTCGACTTCAACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - aaagaaa
- - - - - - - - - - - - - gtgcagg
- - - - - - - - - - - - - - - - - - - - - -ggtgttg