1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaatttcgtacatctgagaaaaaaaaatagggggaggggggatcctatcaaaataactagtaattttggaagcttttaaagctgacactggttatgctttgtaatagcagGCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAGGAGAAACGGCCGGGAAGGAATCGAAAGAGATGAAACCGAAAGAAATTGATCTTTC
species | Oryza sativa |
transcript | LOC_Os01g42850.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATTTCCGGCACCTCATG GCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAGGAGAAAEST: gi|88354941|gb|CI615822.1|CI615822
genomic: ATTTCCGGCACCTCATGgtaatttcgt ... gtaatagcagGCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAGGAGAAA
EST: TGACATACAGCAGTCCCTTGTCGGCGAAGCATCATTTCCGGCACCTCATG GCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAGEST: gi|29672224|gb|CB668499.1|CB668499
genomic: TGACATACAGCAGTCCCTTGTCGGCGAAGCATCATTTCCGGCACCTCATGgtaatttcgt ... gtaatagcagGCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAG
EST: GCGAAGCATCATTTCCGGCACCTCATG GCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAGGAGAAA
genomic: GCGAAGCATCATTTCCGGCACCTCATGgtaatttcgt ... gtaatagcagGCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAGGAGAAA
actagtaattttggaagcttttaaagctgacactggttatgctttgtaatagcagGCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAGGAGAAACGGCCGGGAAGGAATCGAAAGAGATGAAACCGAAAGAAATTGATCTTTC
tttgtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcgtacatctgagaaaaaaaaatagggggaggggggatcctatcaaaataactagtaattttggaagcttttaaagctgacactggttatgctttgtaatagcagGCTGGGATGAACCTGATTATGTGCCTGAAGCAATTGGATGGGAAGGAGAAACGGCCGGGAAGGAATCGAAAGAGATGAAACCGAAAGAAATTGATCTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA