1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatttaatcatagctgtgccacactttctttctcacaagccaattatgaagtttttttttggcttaatttctcacctgaccaatacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTTTTCTGCAAACTCTTTCCAAGATAATTGAGGATCCCAAGGACCTTACAT
species | Oryza sativa |
transcript | LOC_Os12g08170.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAG GTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTEST: gi|29668794|gb|CB665069.1|CB665069
genomic: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAGgtaaatttaa ... tacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCT
EST: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAG GTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTEST: gi|86849211|gb|CI297710.1|CI297710
genomic: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAGgtaaatttaa ... tacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCT
EST: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAG GTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTEST: gi|109711792|gb|CI028962.1|CI028962
genomic: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAGgtaaatttaa ... tacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCT
EST: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAG GTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTEST: gi|89176417|gb|CI043438.1|CI043438
genomic: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAGgtaaatttaa ... tacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCT
EST: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAG GTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTEST: gi|38476241|gb|CF960374.1|CF960374
genomic: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAGgtaaatttaa ... tacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCT
EST: CACTGGTTGGTACAAAAGGTGGTAGTATTGGGATCAAGAACCAAATGCAG GTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCT
genomic: CACTTGTTGGTACAAAAGATGGTAGTATTGGGATCAAGAACCAAATGCAGgtaaatttaa ... tacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCT
gccaattatgaagtttttttttggcttaatttctcacctgaccaatacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTTTTCTGCAAACTCTTTCCAAGATAATTGAGGATCCCAAGGACCTTACAT
ttatgaagtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttaatcatagctgtgccacactttctttctcacaagccaattatgaagtttttttttggcttaatttctcacctgaccaatacatcttagGTCAATGTTACTGCTGATCATCGGGTTATTTACGGAGCTGATCTTGCCGCTTTTCTGCAAACTCTTTCCAAGATAATTGAGGATCCCAAGGACCTTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT