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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcctcttgatttaccagatcatcagtttgtttgatggtcttttaaagtcatcttatatattttgtatatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGCCAGTTCAGCAG

Basic information

species Oryza sativa
transcript LOC_Os11g10480.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218487441|gb|FG970152.1|FG970152
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|27576991|gb|CA999685.1|CA999685
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|218488489|gb|FG955818.1|FG955818
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|27576398|gb|CA999092.1|CA999092
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|286839|gb|D15646.1|D15646
EST:     NGCGTCAAGGATCATNGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|86601886|gb|CI258562.1|CI258562
EST:     TTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: TTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|218502546|gb|FG960588.1|FG960588
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|8527283|gb|AU092098.1|AU092098
EST:     CATTGACNTGAACGCCAACAGATTTGAAGAAG                         CTAGNAAATTTGGGTTGCACTGAATTTGTGAACCCAAAGGACCATG-CAAG
genomic: CATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTT-GGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAG
EST: gi|218479934|gb|FG964885.1|FG964885
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|58654478|gb|CK043158.1|CK043158
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|86601904|gb|CI258580.1|CI258580
EST:     AGGATCATTGGCATTGACCTGTACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCTAAGGACCATGACAAGC
genomic: AGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|10931001|gb|AU161275.1|AU161275
EST:     CCTTCAAGNATCATTGGCATTGACCTGAACGCCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: GCGTCAAGGATCATTGGCATTGACCTGAACG-CCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|33691335|gb|CF319574.1|CF319574
EST:     AGCGTCAAGGATCATTGGCATTGGCCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|8977560|gb|AU097567.1|AU097567
EST:     CCAACAGATTTGAAGAAG                         CTTAGGAAATTTGGTTGCCACTGAATTTTGTGAAACCNAAAGGACCCATGA
genomic: CCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagC-TAGGAAATTTGGTTG-CACTGAA-TTTGTG-AACCCAAAGGA-CCATGA
EST: gi|3760061|gb|C97319.1|C97319
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTT
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTT
EST: gi|27577727|gb|CB000422.1|CB000422
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|218490785|gb|FG954537.1|FG954537
EST:     ATTGACCTAGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: ATTGACCT-GAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|56157717|gb|C25944.2|C25944
EST:     GCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAAT
genomic: GCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTT-GAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAAT
EST: gi|58684111|gb|CK072798.1|CK072798
EST:     CCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: CCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|29677131|gb|CB673406.1|CB673406
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|218503204|gb|FG964656.1|FG964656
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|218500844|gb|FG954985.1|FG954985
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|27577119|gb|CA999813.1|CA999813
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|58589153|gb|CF987461.1|CF987461
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|218500359|gb|FG959079.1|FG959079
EST:     CTGAACGCCAACAGA-TTGAAGAAG                         CTAGGAAA-TTGGTTGCACTGAA-TTGTGAACCCAAAGGACCATGACAAGC
genomic: CTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|27576414|gb|CA999108.1|CA999108
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|218489069|gb|FG948412.1|FG948412
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|88996432|gb|CI259936.1|CI259936
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|44674190|gb|CR287624.1|CR287624
EST:     TTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: TTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|5771055|gb|AU077944.1|AU077944
EST:     TGAACGCCCAACAGATTTGAAGANN                         CTAGGAAATTTTGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: TGAACG-CCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|33688339|gb|CF316578.1|CF316578
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|29677130|gb|CB673405.1|CB673405
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|27577767|gb|CB000462.1|CB000462
EST:     ATTGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|27554222|gb|CA998122.1|CA998122
EST:     TTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: TTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|8527851|gb|AU092666.1|AU092666
EST:     AGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTTGTGAACCCAAAGGNCCATGCCAAG
genomic: AGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAA-TTTGTGAACCCAAAGGACCATGACAAG
EST: gi|38479165|gb|CF963298.1|CF963298
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCGACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|218500564|gb|FG950920.1|FG950920
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|27576194|gb|CA998888.1|CA998888
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|33802804|gb|CF327273.1|CF327273
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|33793396|gb|CF322579.1|CF322579
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|9865031|gb|AU100781.1|AU100781
EST:     GGATCATTGGCCATTGACCTG-ACGCCCAACAGATTTTGAAGAAG                         CTAGGAAATTTTGNTTGCACTGAATTTTTGACCCCCAAAGGACCATGACAA
genomic: GGATCATTGG-CATTGACCTGAACG-CCAACAGA-TTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAA-TTTGGTTGCACTGAATTTGTGA-ACCCAAAGGACCATGACAA
EST: gi|27576924|gb|CA999618.1|CA999618
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGC
EST: gi|27554089|gb|CA997989.1|CA997989
EST:     AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAG                         CTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCA
genomic: AGCGTCAAGGATCATTGGCATTGACCTGAACGCCAACAGATTTGAAGAAGgtaaaatcct ... atatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagtttgtttgatggtcttttaaagtcatcttatatattttgtatatcttcagCTAGGAAATTTGGTTGCACTGAATTTGTGAACCCAAAGGACCATGACAAGCCAGTTCAGCAG
        gtttgat  putative branch site (score: 5)
                                              tatcttc  putative PPT
                   ttttaaagtcatctta  TA-rich tract