1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgtaaacttagatcttcaacgtttttacttttgagttaatattcaattgcttctgtttctgtccaaaccatgaacaagatatcctgcccttgtgtgcagAATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTTACACCTCCTCAAACTCAACCATTGAGGCAACCACATCTATATCCACCTC
species | Oryza sativa |
transcript | LOC_Os11g09329.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGCATCTGGCAGATATCCCCAGTATCACGCTGCTTACCAAGAACTCAGG AATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTTEST: gi|29635153|gb|CB640162.1|CB640162
genomic: GTGCATCTGGCAGATATCCCCAGTATCACGCTGCTTACCAAGAACTCAGGgtactgtcta ... ttgtgtgcagAATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTT
EST: GTGCATCTGGCAGATATCCCCAGTATCACGCTGCTTACCAAGAACTCAGG AATGCTGGTGTTGATTTTCCACCTCGTGAGGATAACACGGTTCCACTGTTTEST: gi|58660357|gb|CK049037.1|CK049037
genomic: GTGCATCTGGCAGATATCCCCAGTATCACGCTGCTTACCAAGAACTCAGGgtactgtcta ... ttgtgtgcagAATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTT
EST: GTGCATCTGGCAGATATCCCCAGTATCACGCTGCTTACCAAGAACTCAGG AATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTTEST: gi|86901649|gb|CI310411.1|CI310411
genomic: GTGCATCTGGCAGATATCCCCAGTATCACGCTGCTTACCAAGAACTCAGGgtactgtcta ... ttgtgtgcagAATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTT
EST: GTGCATCTGGCAGATATCCCCAGTATCACGCTGCTTACCAAGAACTCAGG AATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTT
genomic: GTGCATCTGGCAGATATCCCCAGTATCACGCTGCTTACCAAGAACTCAGGgtactgtcta ... ttgtgtgcagAATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTT
aattgcttctgtttctgtccaaaccatgaacaagatatcctgcccttgtgtgcagAATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTTACACCTCCTCAAACTCAACCATTGAGGCAACCACATCTATATCCACCTC
tcctgccctt CT-rich tract
aagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtaaacttagatcttcaacgtttttacttttgagttaatattcaattgcttctgtttctgtccaaaccatgaacaagatatcctgcccttgtgtgcagAATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTTACACCTCCTCAAACTCAACCATTGAGGCAACCACATCTATATCCACCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC