Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatccccctctccacaactctgcacctgcaactgtcatgacacattgaaactgatctgttgtgcgtttctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC

Basic information

species Oryza sativa
transcript LOC_Os09g37910.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G066528_T01 (Zea mays), 3'ss of exon 6
----gtaatccccctctccacaactctgcacctgcaactgtcatgacacattgaaactgatctgttgtg-cgtttctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC
    || |  | |  |||      || |    |||    |  ||  | | |||       |    |||| | | ||||||||||| | |||| |||  |  | || || || || |||||||||||||||||||||||||||||||||||||     
gtatgttacactcaactctcgttgtccggcgttgct-tcgaaattcctctttgcggtgcgtgacatgtgtcatctctcgttgcagTCTGGAGACCCCACGGCGTCTGGTGATTCCGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGAG---

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G066528_T02 (Zea mays), 3'ss of exon 6
---------gtaatccccctctccacaactctgcacctgcaactgtcatgacacattgaaactgatctgttgtg-cgtttctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC
         || |  | |  |||      || |    |||    |  ||  | | |||       |    |||| | | ||||||||||| | |||| |||  |  | || || || || |||||||||||||||||||||||||||||||||||||     
gtacagtatgttacactcaactctcgttgtccggcgttgct-tcgaaattcctctttgcggtgcgtgacatgtgtcatctctcgttgcagTCTGGAGACCCCACGGCGTCTGGTGATTCCGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGAG---

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G162284_T02 (Zea mays), 3'ss of exon 6
-------gtaatccccctctccacaactctg--cacctgcaactgtcatgacacattgaaactgatctgt------tgtg-cgtttctcgttgcagGC---AGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC
        |  ||  | ||| | | ||||      || |  | || |  |  |  | |    ||   |||       ||| ||| | ||  ||||| |   |||||| ||  |    || || || ||||||||||||||||||||||| ||||||| ||||||||     
gtgcagtatgttctacatctactccactcacgttgcccggcattgcctcggtaattcgtctgtgtgatgtgagtcacgtgtcgtctgtcactgcagTCTGGAGGAGGACCCACATTGTCTGGTGATTCTGACAAGTCCAAGTCCGAGGTCAACGACGGGGACGAGGAG---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33663559|gb|CF294526.1|CF294526
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTTTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33664242|gb|CF295209.1|CF295209
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|55434605|gb|CV730425.1|CV730425
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33684508|gb|CF312747.1|CF312747
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86256064|gb|CI007780.1|CI007780
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33677032|gb|CF305271.1|CF305271
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86528526|gb|CI168732.1|CI168732
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACTACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86432557|gb|CI086168.1|CI086168
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33677015|gb|CF305254.1|CF305254
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|55436884|gb|CV731619.1|CV731619
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88845938|gb|CI084668.1|CI084668
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|55435979|gb|CV731127.1|CV731127
EST:     TACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: TACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|89176361|gb|CI043382.1|CI043382
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86860548|gb|CI323463.1|CI323463
EST:     AGAAGATTGACGCCTACAACAACAAGCAGG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGT
genomic: AGAAGATTGACGCCTACAACAACAAGCA-Ggtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGT
EST: gi|66947180|gb|AU312024.1|AU312024
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88237036|gb|CI236885.1|CI236885
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88214302|gb|CI214151.1|CI214151
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86527793|gb|CI167999.1|CI167999
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33664894|gb|CF295861.1|CF295861
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33655503|gb|CF278117.1|CF278117
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86254444|gb|CI059171.1|CI059171
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86522216|gb|CI162422.1|CI162422
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|109712974|gb|CI105582.1|CI105582
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88217879|gb|CI217728.1|CI217728
EST:     CAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: CAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|13896451|gb|AU182787.1|AU182787
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33655324|gb|CF277938.1|CF277938
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGT
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTA-CCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGT
EST: gi|88728459|gb|CI751969.1|CI751969
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCCCGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|94362993|gb|CI053154.1|CI053154
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|89180836|gb|CI009744.1|CI009744
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCCAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|163926642|gb|EG713658.1|EG713658
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33653913|gb|CF276527.1|CF276527
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88986566|gb|CI033709.1|CI033709
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACGACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88962196|gb|CI097349.1|CI097349
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88204316|gb|CI204165.1|CI204165
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33657650|gb|CF280264.1|CF280264
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATT-ACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86488849|gb|CI131482.1|CI131482
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86507378|gb|CI150011.1|CI150011
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33659198|gb|CF281811.1|CF281811
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATT-ACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|89171274|gb|CI040551.1|CI040551
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88216560|gb|CI214660.1|CI214660
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86253064|gb|CI057989.1|CI057989
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86415474|gb|CI029485.1|CI029485
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88964072|gb|CI032989.1|CI032989
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88979426|gb|CI025928.1|CI025928
EST:     GGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: GGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88511789|gb|CI439295.1|CI439295
EST:     CTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: CTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33657164|gb|CF279778.1|CF279778
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCCTCAGGCGACTTTGACAAGTCCAAGTCCGAGGT
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTA-CCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGT
EST: gi|13896450|gb|AU182786.1|AU182786
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86524796|gb|CI165002.1|CI165002
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|55434296|gb|CV730269.1|CV730269
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88986637|gb|CI033780.1|CI033780
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACTACAACAAGCAG                         GCAGGGGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86517396|gb|CI157602.1|CI157602
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|55439163|gb|CV732883.1|CV732883
EST:     AAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88205754|gb|CI205603.1|CI205603
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33659824|gb|CF282437.1|CF282437
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33680144|gb|CF308383.1|CF308383
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|88979044|gb|CI025558.1|CI025558
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|33656519|gb|CF279133.1|CF279133
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|32947912|gb|BP184484.1|BP184484
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86419590|gb|CI054391.1|CI054391
EST:     AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: AGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
EST: gi|86488236|gb|CI130869.1|CI130869
EST:     CGCCTACAACAACAAGCAG                         GCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG
genomic: CGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 145

GACAAGGCTCCTTTCGTGACCAAGGCTGAGAAGCTCAAGGCTGAGTACACCAAGAAGATTGACGCCTACAACAACAAGCAGgtaatccccc ... ctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctgcaactgtcatgacacattgaaactgatctgttgtgcgtttctcgttgcagGCAGGAGGCCCGGCTACCTCAGGCGACTCTGACAAGTCCAAGTCCGAGGTGAACGACGAGGACGAGGGCAGC
                         aactgat  putative branch site (score: 145)
                                          tttctcgtt  putative PPT
                    attgaaa  TA-rich tract