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...ttaattcaaatatatgggtgccagaaactaaatatcctcaacagtttgtttaatgatgtactcctacatattatttatgatcactttattcaattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTGCAGCTGGAACA
species | Oryza sativa |
transcript | LOC_Os09g36800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|58586315|gb|CF984623.1|CF984623
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGCTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|88429289|gb|CI690188.1|CI690188
genomic: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|88448544|gb|CI693932.1|CI693932
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|88903765|gb|CI711467.1|CI711467
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|38483247|gb|CF967049.1|CF967049
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGCTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|88591454|gb|CI707490.1|CI707490
genomic: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|88585740|gb|CI701477.1|CI701477
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|88306817|gb|CI671980.1|CI671980
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|88581192|gb|CI698166.1|CI698166
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|25798307|gb|CA754268.1|CA754268
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: AGGANAGTGGTCTCCGAGCAACACTTAATCTCGGNCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCCTGGGGAGGCTGTTEST: gi|88587435|gb|CI705181.1|CI705181
genomic: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|218479549|gb|FG949471.1|FG949471
genomic: GGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATACAAACAGGAACTGGCTATGGAGCATGGCTCCATGGGGAGGCTGTTEST: gi|218496360|gb|FG958514.1|FG958514
genomic: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTT
EST: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCAT GCTATAGAAACAGGAACTGGCTATGGAGCATGGCTCCAT
genomic: AGGAAAGTGGTCTCCGAGCAACACTTAATCTCGGCCATACATTTGGCCATgtaagtatta ... caattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCAT
ttgtttaatgatgtactcctacatattatttatgatcactttattcaattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTGCAGCTGGAACA
gtttaat putative branch site (score: 39)
ctttattc putative PPT
atattatttatgatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaattcaaatatatgggtgccagaaactaaatatcctcaacagtttgtttaatgatgtactcctacatattatttatgatcactttattcaattgccagGCTATAGAAACAGGAACTGGTTATGGAGCATGGCTCCATGGGGAGGCTGTTGCAGCTGGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - -gtgccag
- - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgat