1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tcatttgcatatatagaacgtgctagaaacctctactagcaatttgctagtagcaaataagttttatctttattatgctctaaaattctgattgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCGGGAACCCCTGTAACACTAA
species | Oryza sativa |
transcript | LOC_Os08g44810.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAG GGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCEST: gi|38468692|gb|CF952823.1|CF952823
genomic: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAGgtcttctttt ... attgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTC
EST: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAG GGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCEST: gi|29686259|gb|CB682534.1|CB682534
genomic: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAGgtcttctttt ... attgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTC
EST: TGGAGCGATCTGCCTTACTACATATCAACGGTCAAATCTTTGCTGAACAG GGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCEST: gi|30227998|gb|CB965890.1|CB965890
genomic: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAGgtcttctttt ... attgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTC
EST: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAG GGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCEST: gi|29686257|gb|CB682532.1|CB682532
genomic: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAGgtcttctttt ... attgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTC
EST: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAG GGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCEST: gi|29677717|gb|CB673992.1|CB673992
genomic: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAGgtcttctttt ... attgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTC
EST: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAG GGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTC
genomic: TGGAGCGATCTGCCTTACTAGATATCAACGGTCAAATCTTTGCTGAACAGgtcttctttt ... attgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTC
gctagtagcaaataagttttatctttattatgctctaaaattctgattgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCGGGAACCCCTGTAACACTAA
ttctgat putative branch site (score: 80)
aaataagttttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttgcatatatagaacgtgctagaaacctctactagcaatttgctagtagcaaataagttttatctttattatgctctaaaattctgattgtatcagGGGAAAGCACTTAACTCCGTGGCATCTCGGAATGTGAAGGTCATAGTTGTCGGGAACCCCTGTAACACTAA
-catttgc
- - - - - - - - - cgtgcta
- - - - - - - - - - - - - - - - - - - - - tttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - -agcaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgct