1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagaatcggttaaccaattgtgtggtacgatcttgttcttgctgcgtatgactaattattagtttcttttactttgttcacttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTA
species | Oryza sativa |
transcript | LOC_Os08g02210.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88304253|gb|CI515526.1|CI515526
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88514830|gb|CI442336.1|CI442336
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: GTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGEST: gi|88380039|gb|CI513629.1|CI513629
genomic: GTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTA-GCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAG
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGNTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|38473728|gb|CF957860.1|CF957860
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|27548230|gb|CA766156.2|CA766156
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88319139|gb|CI513203.1|CI513203
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88520671|gb|CI448325.1|CI448325
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC CCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88454964|gb|CI514205.1|CI514205
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|5607474|gb|AU076259.1|AU076259
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAG-TAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88454978|gb|CI514219.1|CI514219
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88375603|gb|CI525697.1|CI525697
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: TCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88436961|gb|CI523911.1|CI523911
genomic: TCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: CTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88455218|gb|CI516856.1|CI516856
genomic: CTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88468405|gb|CI514887.1|CI514887
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGAEST: gi|88319237|gb|CI515698.1|CI515698
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
EST: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTAC GCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
genomic: AGTTTCTTATGAAAACGCTCGCACCACAGCTCATAGCCCATAGTAGCTACgtaagaatcg ... ttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGA
tcttgctgcgtatgactaattattagtttcttttactttgttcacttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTA
gactaat putative branch site (score: 29)
tttcttttactttgtt putative PPT
taattattagtttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatcggttaaccaattgtgtggtacgatcttgttcttgctgcgtatgactaattattagtttcttttactttgttcacttgcctgcagGCCAATCGACAGTTCATACGTTGTACCACTCTTTATCATTTGGTATATAGATAGACAGATCACAGAAAACCGTCAGTGATCTCCTTGCCTGGGAAAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA