1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acaatgttattttttttcccattttattcaaaaagctccaaggctacttctgattccttataacatgtatatcaatctcgctttctgttttatgatgtagGTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAATATTCTCTTCCATCGAGACAATAATTGGGAAGAAAAAT
species | Oryza sativa |
transcript | LOC_Os07g29620.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGGATTAACAAAATTGTTCCAACTTGTGAACTTGCTATCAAGCTCTGTG GTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAAEST: gi|29639499|gb|CB644508.1|CB644508
genomic: CAGGATTAACAAAATTGTTCCAACTTGTGAACTTGCTATCAAGCTCTGTGgtaagtcatg ... tatgatgtagGTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAA
EST: CAGGATTAACAAAATTGTTCCAACTTGTGAACTTGCTATCAAGCTCTGTG GTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAAEST: gi|29669656|gb|CB665931.1|CB665931
genomic: CAGGATTAACAAAATTGTTCCAACTTGTGAACTTGCTATCAAGCTCTGTGgtaagtcatg ... tatgatgtagGTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAA
EST: CAGGATTAACAAAATTGTTCCAACTTGTGAACTTGCTATCAAGCTCTGTG GTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAAEST: gi|29667652|gb|CB663927.1|CB663927
genomic: CAGGATTAACAAAATTGTTCCAACTTGTGAACTTGCTATCAAGCTCTGTGgtaagtcatg ... tatgatgtagGTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAA
EST: CAGGATTAACAAAATTGTTCCAACTTGTGAACTTGCTATCAAGCTCTGTG GTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAA
genomic: CAGGATTAACAAAATTGTTCCAACTTGTGAACTTGCTATCAAGCTCTGTGgtaagtcatg ... tatgatgtagGTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAA
acttctgattccttataacatgtatatcaatctcgctttctgttttatgatgtagGTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAATATTCTCTTCCATCGAGACAATAATTGGGAAGAAAAAT
ttataac putative branch site (score: 43)
tctcgctttctgtttt putative PPT
ttataacatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatgttattttttttcccattttattcaaaaagctccaaggctacttctgattccttataacatgtatatcaatctcgctttctgttttatgatgtagGTACCTCTGGCACTATATCTTGCCTTGGCGCATATGTTGTCTGCAATCTAATATTCTCTTCCATCGAGACAATAATTGGGAAGAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-caatgtt
- - - - - - - - - - - - - - - - -agctcca
- - - - - - - - - - - - - - - - - - - - -ggctact
- - - - - - - - - - - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat