1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcgtgactggtgcctatgcatttgtcgtctatatgtgcttgtgaccagtacatgacaaagcaatcctggtttccttgtaccgtcttctcgatctcaacgtgtgtgtggtcgtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGAC
species | Oryza sativa |
transcript | LOC_Os04g48880.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAEST: gi|88721251|gb|CI744550.1|CI744550
genomic: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
EST: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAEST: gi|218479163|gb|FG957001.1|FG957001
genomic: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
EST: TCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAEST: gi|38468918|gb|CF953049.1|CF953049
genomic: TCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
EST: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAEST: gi|2276035|gb|C25012.1|C25012
genomic: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
EST: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAEST: gi|88245426|gb|CI245275.1|CI245275
genomic: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
EST: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAEST: gi|86478555|gb|CI121188.1|CI121188
genomic: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
EST: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAEST: gi|87022123|gb|CI259195.1|CI259195
genomic: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
EST: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAEST: gi|29684804|gb|CB681079.1|CB681079
genomic: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
EST: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAG GAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
genomic: ACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgact ... gtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgactggtgcctatgcatttgtcgtctatatgtgcttgtgaccagtacatgacaaagcaatcctggtttccttgtaccgtcttctcgatctcaacgtgtgtgtggtcgtgcgtgcagGAGCTGGAGGAGGTTGGTGGTCTGGAAGAGCTGGAGAAGGAGCTTGCGAGAATCAACCGGAGCTTGTGATTTTGACGGCGGCAATTGCAGCTAGCAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA