1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaagtatctagaatgtataattaaatactcaagtatttatcaatgtctattaaatacttacttttgatatctccaaggtgagattaatttgttacattatttttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGAGGAATTTCATTCAG
species | Oryza sativa |
transcript | LOC_Os03g58960.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGEST: gi|27577344|gb|CB000039.1|CB000039
genomic: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
EST: TTATGATTATGAATGTTTCACTTGTTTCTGCTAATACTTTAACAATTGAG GCATATGAAAAEST: gi|86417491|gb|CI031700.1|CI031700
genomic: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAA
EST: ACAACAACAATTGAG GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGEST: gi|86859035|gb|CI276977.1|CI276977
genomic: ACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
EST: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGEST: gi|87012987|gb|CI297214.1|CI297214
genomic: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
EST: TGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGEST: gi|29659673|gb|CB655948.1|CB655948
genomic: TGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
EST: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGEST: gi|218500781|gb|FG951176.1|FG951176
genomic: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
EST: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAAAAGAACACTACGCCACGCTGGATGTATGATATTGEST: gi|27554328|gb|CA998228.1|CA998228
genomic: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTG
EST: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAC GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGEST: gi|86500478|gb|CI143111.1|CI143111
genomic: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
EST: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGEST: gi|86258794|gb|CI000023.1|CI000023
genomic: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
EST: TTTCTGCTAATACAACAACAATTGAG GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGEST: gi|87018830|gb|CI256715.1|CI256715
genomic: TTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
EST: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAG GCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
genomic: TTATGATTATGCATGTTTCACTTGTTTCTGCTAATACAACAACAATTGAGgcaagtatct ... ttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAG
ttacttttgatatctccaaggtgagattaatttgttacattatttttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGAGGAATTTCATTCAG
ttatttttttattt CT-rich tract
tgagattaatttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtatctagaatgtataattaaatactcaagtatttatcaatgtctattaaatacttacttttgatatctccaaggtgagattaatttgttacattatttttttatttagGCATATGAAAAGAAAACTACGCCACGCTGGATGTATGATATTGGCCGGAAGAGGAATTTCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA