1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatactctttaattacttcaaatctgccgaataaataccatgataattttatcgaccaactgttctcgaaaattctaaaatggtctttgcctatgaagGTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT
species | Oryza sativa |
transcript | LOC_Os03g46740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTG GTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTEST: gi|29620621|gb|CB625632.1|CB625632
genomic: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTGgtatactctt ... gcctatgaagGTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTT
EST: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTG GTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTEST: gi|218486282|gb|FG952873.1|FG952873
genomic: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTGgtatactctt ... gcctatgaagGTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTT
EST: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTG GTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTEST: gi|58672683|gb|CK061369.1|CK061369
genomic: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTGgtatactctt ... gcctatgaagGTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTT
EST: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTG GTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTEST: gi|27547660|gb|CA767399.2|CA767399
genomic: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTGgtatactctt ... gcctatgaagGTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTT
EST: GACATGGGCTNGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTG GTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTT
genomic: GACATGGGCTAGTTAGTGATGAAGACATATCTGGTGTCCGAATTGGCTTGgtatactctt ... gcctatgaagGTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTT
taattttatcgaccaactgttctcgaaaattctaaaatggtctttgcctatgaagGTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT
ttctaaa putative branch site (score: 20)
tctttgcct putative PPT
aaaattctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactctttaattacttcaaatctgccgaataaataccatgataattttatcgaccaactgttctcgaaaattctaaaatggtctttgcctatgaagGTGTTTCAAAGTGCAGCTTTGTTTGATTCTCTCACGGTTCGTGAAAATGTTGGATTCCTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT