1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctccagcctttactttgtttcactttgacaagcaaatctaccactgttcttgtccatcattgctcaaaacacctgatggtaactgattgaaaacttgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCT
species | Oryza sativa |
transcript | LOC_Os03g09140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG CCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCAEST: gi|33812522|gb|CF332149.1|CF332149
genomic: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGgtctccagcc ... tgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCA
EST: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG CCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCAEST: gi|33684734|gb|CF312973.1|CF312973
genomic: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGgtctccagcc ... tgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCA
EST: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG CCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCAEST: gi|16577976|gb|BI812071.1|BI812071
genomic: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGgtctccagcc ... tgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCA
EST: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG CCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCAEST: gi|33682508|gb|CF310747.1|CF310747
genomic: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGgtctccagcc ... tgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCA
EST: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG CCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATEST: gi|33812520|gb|CF332148.1|CF332148
genomic: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGgtctccagcc ... tgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAAT
EST: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAG CCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCA
genomic: ACGGCGCCATGTTCATGGAAACCAGCGCAAAAGCTGGATTCAACATCAAGgtctccagcc ... tgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCA
tgtccatcattgctcaaaacacctgatggtaactgattgaaaacttgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCT
attgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctccagcctttactttgtttcactttgacaagcaaatctaccactgttcttgtccatcattgctcaaaacacctgatggtaactgattgaaaacttgaaccacagCCACTGTTTCGCAAGATCGCTGCATCGCTGCCTGGAATGGAGGCGCTCTCATCGGCAAAGCAGGAAGACATGGTGGACATAAACCTACGGCCTGCTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC