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...cagtgagattgtaccatgtcgactattgtgaagtatgttatgtttccacttcttttttcaggtatgaagcactttcagattgttttttcttatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAG
species | Oryza sativa |
transcript | LOC_Os03g05740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAG GAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATEST: gi|3760086|gb|C97344.1|C97344
genomic: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAAT
EST: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAG GAACTTCAAAAACATGGTANTCCTGATATTATCATGGTEST: gi|6782805|gb|C99985.1|C99985
genomic: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGT
EST: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAG GAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATEST: gi|55412383|gb|CV724759.1|CV724759
genomic: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAAT
EST: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAG GAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATEST: gi|300216317|gb|HO088102.1|HO088102
genomic: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAAT
EST: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAG GAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATEST: gi|25803490|gb|CA759389.1|CA759389
genomic: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAAT
EST: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAG GAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATEST: gi|3760087|gb|C97345.1|C97345
genomic: ACGACATAACTAGTCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAAT
EST: GACATAACTAGTCCCAG-ATCCATTTAGCNAAGCACAATACTGGGTGAAG GAACTTCAAAAACATGGTAGTCCTGATATTATCCATGGTTTTGGTTGGTNAEST: gi|88264996|gb|CI368770.1|CI368770
genomic: GACATAACTAGT-CCAGAAT-CATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTAT-CATGGTTTTGGTTGGTAA
EST: AAAGCACAATACTGGGTGAAG GAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATEST: gi|33666789|gb|CF297756.1|CF297756
genomic: AAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAAT
EST: TCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAG GAACTTCAAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAA
genomic: TCCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGgtatgctatc ... tatattgcagGAACTTC-AAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAA
ccacttcttttttcaggtatgaagcactttcagattgttttttcttatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAG
ttgttttttcttat CT-rich tract
attgttttttcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtgagattgtaccatgtcgactattgtgaagtatgttatgtttccacttcttttttcaggtatgaagcactttcagattgttttttcttatattgcagGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - -ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaagca