1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttagagtttaatggcagattgctcggcctcaattgcaccagttgtcaatagttttggcaccacaaatcttgacagtttgtggttgtaaatctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCG
species | Oryza sativa |
transcript | LOC_Os02g53490.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAG TTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATEST: gi|218505618|gb|FG958833.1|FG958833
genomic: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGgtttgccctc ... ctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACAT
EST: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAG TTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATEST: gi|3767106|gb|AU031216.1|AU031216
genomic: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGgtttgccctc ... ctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACAT
EST: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAG TTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATEST: gi|14571407|gb|BI118775.1|BI118775
genomic: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGgtttgccctc ... ctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACAT
EST: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAG TTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATEST: gi|218500992|gb|FG966562.1|FG966562
genomic: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGgtttgccctc ... ctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACAT
EST: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAG TTACACTGGTGGGTCAATGTGCCCCTTCAGATATGCTGCAGAAACTGACATEST: gi|58680016|gb|CK068703.1|CK068703
genomic: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGgtttgccctc ... ctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACAT
EST: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAG TTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATEST: gi|14571434|gb|BI118802.1|BI118802
genomic: TGCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACGAAAATGCAGgtttgccctc ... ctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACAT
EST: GCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATACCGAAAATGCAG TTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCANAAACTGACAT
genomic: GCTGTGTATACCATTGTGAATTGGTCTGGAACTGTATAC-GAAAATGCAGgtttgccctc ... ctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACAT
caatagttttggcaccacaaatcttgacagtttgtggttgtaaatctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCG
tcttgac putative branch site (score: 6)
tctttat putative PPT
ttgtaaatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagagtttaatggcagattgctcggcctcaattgcaccagttgtcaatagttttggcaccacaaatcttgacagtttgtggttgtaaatctttatgcagTTACACTGGTGGGTCAGTGTGCCCCTTCAGATATGCTGCAGAAACTGACATACCTCGCCATGAAGCACGATCCACGTGTGAGGCGGGTTGACACGGTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - gattgct
- - - - - - - - - - - - - - - - ttgcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg