1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acatggatgctatcgttcattcgtcaccctgcatctttttatagtgtctgcttaagtgttctccttttgtgaataacttcatattacttggcctttgtagCAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTCAGTTTACACAGGCTAGTGGTTCAGACCAAAGAGCAAGCTGAACTATGCT
species | Oryza sativa |
transcript | LOC_Os02g48340.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTG CA-C-C-GGTTCCTACTCACCCGCACTTGGTCCTCCCAACTCACTCACCTCEST: gi|33793822|gb|CF322799.1|CF322799
genomic: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTGgtaatgtggt ... gcctttgtagCAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTC
EST: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTG CA-C-C-GGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTCEST: gi|29677295|gb|CB673570.1|CB673570
genomic: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTGgtaatgtggt ... gcctttgtagCAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTC
EST: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTG CA-C-C-GGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTCEST: gi|218479580|gb|FG967759.1|FG967759
genomic: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTGgtaatgtggt ... gcctttgtagCAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTC
EST: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTG CA-C-C-GGTTCCTACTCACCCGCACTTGGTCCTCCCAACTCACTCACCTCEST: gi|33676574|gb|CF304813.1|CF304813
genomic: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTGgtaatgtggt ... gcctttgtagCAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTC
EST: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTG CAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTC
genomic: CAGTGCATCGCCTACACCTCGGCCCACCATTCAGGCCCCCTTTTTAGTTGgtaatgtggt ... gcctttgtagCAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTC
gtctgcttaagtgttctccttttgtgaataacttcatattacttggcctttgtagCAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTCAGTTTACACAGGCTAGTGGTTCAGACCAAAGAGCAAGCTGAACTATGCT
gaataac putative branch site (score: 3)
cctttgt putative PPT
aataacttcatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatggatgctatcgttcattcgtcaccctgcatctttttatagtgtctgcttaagtgttctccttttgtgaataacttcatattacttggcctttgtagCAGCACCGGTTCCTACTCACCCGCACTTGGTCCTCCCAGCTCACTCACCTCAGTTTACACAGGCTAGTGGTTCAGACCAAAGAGCAAGCTGAACTATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- -tggatgc
- - - - - - - - - - - - - ccctgca
- - - - - - - - - - - - - - - - - - - - - - - -ctgctta