1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaaggttttattttcatatggtgcttgaatttttgaattttaaatgcattgattaccatattatctatgtctaattctttattggtcagATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAA
species | Oryza sativa |
transcript | LOC_Os02g47410.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATAGTCTAAGAGGTTTGCAACTGAAATATGTCCGAACTTTCTCTAGACAG ATATTGGATGCATTGGTGGGGATGAAGGACGCTGGCATTATTCATTGTGATEST: gi|29638402|gb|CB643411.1|CB643411
genomic: ATAGTCTAAGAGGTTTGCAACTGAAATATGTCCGAACTTTCTCTAGACAGgtaaggtttt ... tattggtcagATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGAT
EST: ATAGTCTAAGAGGTTTGCAACTGAAATATGTCCGAACTTTCTCTAGACAG ATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGATEST: gi|58610888|gb|CK038600.1|CK038600
genomic: ATAGTCTAAGAGGTTTGCAACTGAAATATGTCCGAACTTTCTCTAGACAGgtaaggtttt ... tattggtcagATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGAT
EST: ATAGTCTAAGAGGTTTGCAACTGAAATATGTCCGAACTTTCTCTAGACAG ATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGATEST: gi|58666776|gb|CK055462.1|CK055462
genomic: ATAGTCTAAGAGGTTTGCAACTGAAATATGTCCGAACTTTCTCTAGACAGgtaaggtttt ... tattggtcagATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGAT
EST: ATAGTCTAAGAGGTTTGCAACTGAAATATGTCCGAACTTTCTCTAGACAG ATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGAT
genomic: ATAGTCTAAGAGGTTTGCAACTGAAATATGTCCGAACTTTCTCTAGACAGgtaaggtttt ... tattggtcagATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGAT
gaattttaaatgcattgattaccatattatctatgtctaattctttattggtcagATATTGGATGCATTGGTTGTCATGAAGGACGCTGGCATTATTCATTGTGATCTAAAACCGGAAAATATTCTCATAACTCCAAA
gtctaat putative branch site (score: 3)
ttctttatt CT-rich tract
tctaattctttatt TA-rich tract