1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catgtgcacaacacaataatcaccttttgcaatcttgcacattaagatcagaatttggtatgacagcaactgagcccttcctgctgctgtacatgaacagGGGGAGGAGCTGAAGAGGATGATAGGTGCTGCGGCGTACATCGAATGCAGCTCCAAGACGCAGCAG
species | Oryza sativa |
transcript | LOC_Os02g20850.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAGTTCTTCCTGGACCACCCTGGTCTAGCACCTATTTCCACTGCACAG GGGGAGGAGCTGAAGAGGATGATAGGTGCTGCGGCGTACATCGAATGCAGCEST: gi|33681463|gb|CF309702.1|CF309702
genomic: AGCAGTTCTTCCTGGACCACCCTGGTCTAGCACCTATTTCCACTGCACAGgtcagttcaa ... acatgaacagGGGGAGGAGCTGAAGAGGATGATAGGTGCTGCGGCGTACATCGAATGCAGC
EST: AGCAGTTCTTCCTGGACCGCCCTGGTCTAGCACCTATTTCCACTGCACAG GNGGGAGGAGCTGAAGAGGATGATAGGTGCTGCGGCGTACATCGAATGCAG
genomic: AGCAGTTCTTCCTGGACCACCCTGGTCTAGCACCTATTTCCACTGCACAGgtcagttcaa ... acatgaacagG-GGGAGGAGCTGAAGAGGATGATAGGTGCTGCGGCGTACATCGAATGCAG
gatcagaatttggtatgacagcaactgagcccttcctgctgctgtacatgaacagGGGGAGGAGCTGAAGAGGATGATAGGTGCTGCGGCGTACATCGAATGCAGCTCCAAGACGCAGCAG
aattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtgcacaacacaataatcaccttttgcaatcttgcacattaagatcagaatttggtatgacagcaactgagcccttcctgctgctgtacatgaacagGGGGAGGAGCTGAAGAGGATGATAGGTGCTGCGGCGTACATCGAATGCAGCTCCAAGACGCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
catgtgc
- - - - caacaca
- - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - tcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcaac