1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atacttgcaaatgtttcctaactacttttgatgcttctcatgcatactttctgtgagatcgtctctttcttcatctcatattggtccctctcattttaagGTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTGGGCAATTCGACATATACCCTCGAGAATGGATTCCAAAGGCAATGGATAGCTTTG
species | Oryza sativa |
transcript | LOC_Os02g10290.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCCAGTTCAGAAGTTGGCAGATAGGATTTCACGGTTTTTTGTCCCAACG GTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTGGGCAAEST: gi|29680251|gb|CB676526.1|CB676526
genomic: CTCCAGTTCAGAAGTTGGCAGATAGGATTTCACGGTTTTTTGTCCCAACGgtaggttcgc ... tcattttaagGTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTGGGCAA
EST: CTCCAGTTCAGAAGTTGGCAGATAGGATTTCACGGTTTTTTGTCCCAACG GTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTGGGCAAEST: gi|86904464|gb|CI308674.1|CI308674
genomic: CTCCAGTTCAGAAGTTGGCAGATAGGATTTCACGGTTTTTTGTCCCAACGgtaggttcgc ... tcattttaagGTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTGGGCAA
EST: CTCCAGTTCAGAAGTTGGCAGATAGGATTTCACGGTTTTTTGTCCCAACG GTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTNGGCAA
genomic: CTCCAGTTCAGAAGTTGGCAGATAGGATTTCACGGTTTTTTGTCCCAACGgtaggttcgc ... tcattttaagGTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTGGGCAA
actttctgtgagatcgtctctttcttcatctcatattggtccctctcattttaagGTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTGGGCAATTCGACATATACCCTCGAGAATGGATTCCAAAGGCAATGGATAGCTTTG
tccctctcatttt CT-rich tract
tcattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacttgcaaatgtttcctaactacttttgatgcttctcatgcatactttctgtgagatcgtctctttcttcatctcatattggtccctctcattttaagGTTGTGGTGGCTGCATTTCTTACATGGCTTGGCTGGTTCGTAGCTGGGCAATTCGACATATACCCTCGAGAATGGATTCCAAAGGCAATGGATAGCTTTG
- acttgca
- - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtccc