1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatttcatgattcctttgaaattatctattttgctttgtacttgtaatgatcattggttctttctaacggttgaacgactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAAGCTATTGAAGCAGTATGTAGTTGCTGATCCAGAGATCAAGGTTTGACT
species | Oryza sativa |
transcript | LOC_Os02g05630.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|33675133|gb|CF303372.1|CF303372
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTEST: gi|29686520|gb|CB682795.1|CB682795
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTT
EST: AGATGAGAGACTAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGAEST: gi|5003494|gb|AU068643.1|AU068643
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAEST: gi|29662047|gb|CB658322.1|CB658322
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG GGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
genomic: AGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTGgtaatttcat ... gactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATA
tgctttgtacttgtaatgatcattggttctttctaacggttgaacgactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAAGCTATTGAAGCAGTATGTAGTTGCTGATCCAGAGATCAAGGTTTGACT
ttctaac putative branch site (score: 1)
ttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcatgattcctttgaaattatctattttgctttgtacttgtaatgatcattggttctttctaacggttgaacgactttgcagGGACGTGGCGTGTTGGTGGTGTTCTTGCTGTTTCTCGAGCATTTGGTGATAAGCTATTGAAGCAGTATGTAGTTGCTGATCCAGAGATCAAGGTTTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA