1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tagggtcaacttgaattgtcttcgaacaatactcgattcgattcgtcagaaggacctttaatggattcctgtactacatgttctttctcttgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACGTGTTACAGCCTGGAAAAAACATGGTTGCTGCTGGATACTGCATGTACG
species | Oryza sativa |
transcript | LOC_Os01g64660.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACEST: gi|38473796|gb|CF957928.1|CF957928
genomic: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
EST: ATCCACTCGACGG-TCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACEST: gi|58588683|gb|CF986991.1|CF986991
genomic: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
EST: GGCGT-TCCATCGGAACG ATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACEST: gi|58590217|gb|CF988525.1|CF988525
genomic: GGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
EST: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACEST: gi|33663175|gb|CF294142.1|CF294142
genomic: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
EST: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACEST: gi|44676478|gb|CR289912.1|CR289912
genomic: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
EST: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACEST: gi|88370994|gb|CI595106.1|CI595106
genomic: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
EST: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACEST: gi|38480766|gb|CF964855.1|CF964855
genomic: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
EST: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACEST: gi|4714676|gb|AU055793.1|AU055793
genomic: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
EST: ATCCACTCGACGGCTCCNCCAACATCGACTGTNGCGTCTCCATCGGAACG ATCTTTGGGATCNACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
genomic: ATCCACTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtgcgtacac ... tgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGAC
tcagaaggacctttaatggattcctgtactacatgttctttctcttgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACGTGTTACAGCCTGGAAAAAACATGGTTGCTGCTGGATACTGCATGTACG
ctttaat putative branch site (score: 4)
tgttctttctcttgtt putative PPT
ttgttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagggtcaacttgaattgtcttcgaacaatactcgattcgattcgtcagaaggacctttaatggattcctgtactacatgttctttctcttgttttatagATCTTTGGGATCTACATGATCAAAGATAAGGAGAATGTGACTCTTGAGGACGTGTTACAGCCTGGAAAAAACATGGTTGCTGCTGGATACTGCATGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA