1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttgtcatattatgtgcatgctatttatctagaaacagattacattatagacaccatttgacaaactccatataattcctttgtaatgctacttacacagGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAG
species | Oryza sativa |
transcript | LOC_Os01g55360.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTG GTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTEST: gi|29673386|gb|CB669661.1|CB669661
genomic: TTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGgtaagccata ... acttacacagGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCT
EST: TTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTG GTTTCTGGTGCCTGCTTCTCTCATGGTGAT-AACGACATTGCTGCCTATCTEST: gi|58663757|gb|CK052443.1|CK052443
genomic: TTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGgtaagccata ... acttacacagGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCT
EST: TTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTG GTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTEST: gi|29679197|gb|CB675472.1|CB675472
genomic: TTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGgtaagccata ... acttacacagGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCT
EST: TTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAAGGATGTTCTG GTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCT
genomic: TTTGCACAATCTTCTTTTACCGTGGCAAATATATTTGAAGGGATGTTCTGgtaagccata ... acttacacagGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCT
tatagacaccatttgacaaactccatataattcctttgtaatgctacttacacagGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAG
tacttac putative branch site (score: 1)
atataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtcatattatgtgcatgctatttatctagaaacagattacattatagacaccatttgacaaactccatataattcctttgtaatgctacttacacagGTTTCTGTTGCCTGCTTCTCTCATTGTGATTAACGACATTGCTGCCTATCTATTTGGGTTCTTTCTTGGGAGAACACCTCTGATCAAGTTATCTCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA