1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttgtgcactctgccccgtaacgcaatttttgcaccgttttctgcaaaagatgttcacgatttgatgatcgatggagccgatctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACC
species | Oryza sativa |
transcript | LOC_Os01g43700.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATATCAATGGCGTTAGCCGCCTGAAAGTC GTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGEST: gi|218485416|gb|FG945027.1|FG945027
genomic: ATATCAATGGCGTTAGCCGCCTGAAAGTCgtgagttgtg ... tctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
EST: TCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTC GTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGEST: gi|5039082|gb|AU071192.1|AU071192
genomic: TCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTCgtgagttgtg ... tctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
EST: CTTTGGGCGAAACAAACCTGATATCAATGGCGTTA--CGNCCTGAAAGTC GTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
genomic: CTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCG-CCTGAAAGTCgtgagttgtg ... tctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
gttttctgcaaaagatgttcacgatttgatgatcgatggagccgatctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACC
atttgat putative branch site (score: 9)
tcttt putative PPT
aaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgtgcactctgccccgtaacgcaatttttgcaccgttttctgcaaaagatgttcacgatttgatgatcgatggagccgatctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATGATGAACCGCCGCACGTACAAGGAGATCGAGCTCGGCGGCGTCAGGTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC