Sequence
atgc intronic sequence ATGC exonic sequencegtgattattctttcattgtttctagtccagtagatatagcatttctttttaccatgttgtacccatcatagccaattatcctgacttagtttgcatgttaccagTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGCAGATTTTGTGGGCGAGGTTTTTGGAAATTTATCTTCGTTCAGTCATATT
Basic information
species | Oryza sativa |
transcript | LOC_Os01g39810.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G164175_T02 (Zea mays), 3'ss of exon 9
gtgattattct-ttcattgtttctagtccagtagatatagcatttctttttaccatgttgtaccc-atcatagccaattatcctgacttagtttgcatgttaccagTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGCAGATTTTGTGGGCGAGGTTTTTGGAAATTTATCTTCGTTCAGTCATATT
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gtggttattttctttgttttttaatgacaaaaatagttaacctttcatatctatac-ttgtgcttgaatacatacgtccctgctgacgcgttctac-tgcactcagTGATAGCAAAGGGACCTTGGATGAGTCAGATCGTTTCCTTACAAGTCCATCTGAGTTTGTCGGCGAGGTTTTTGGAAATTTATCTGCATTCAGTCACATT
upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G000937_T02 (Zea mays), 3'ss of exon 9
gtgattattctttcattgtttctagtccagtagatatagcatttctttttaccatg-ttgtaccc-atcatagccaattatcctgacttagtttgcatgttaccagTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGCAGATTTTGTGGGCGAGGTTTTTGGAAATTTATCTTCGTTCAGTCATATT
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gtggttattttatt-tgttttttaatgaaaaaaatagttaacctttcatatctatacttgtgcttgaatacatatgtccctgctgactcgttctac-tgcactcagTGATAGCAAAGGGACCTTGGATGAGTCAGATCGTTTCCTTACAAGTCCATCTGAGTTTGTCGGCGATGTTTTTGGAAATTTATCTGCATTCAGTCACATT
upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G103473_T01 (Zea mays), 3'ss of exon 2
gtgattattctttcattgtttctagtccagtagatatagcatttctttttaccatg-ttgtaccc-atcatagccaattatcctgacttagtttgcatgttaccagTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGCAGATTTTGTGGGCGAGGTTTTTGGAAATTTATCTTCGTTCAGTCATATT
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gtggttattttatt-tgttttttaatgaaaaaaatagttaacctttcatatctatacttgtgcttgaatacatatgtccctgctgactcgttctac-tgcactcagTGATAACAAAGGGACCTTGGATGAGTCACATCGTTTCCTTACAAGTCCATCTGAGTTTGTCGGCGATGTTTTTGGAAATTTATCTGCATTCAGTCACATT
upper sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 5
lower sequence: Vv11s0037g01100.t01 (Vitis vinifera), 3'ss of exon 9
---------gtgattattctttcattgtttctagtccagtagatatagcatttctttttaccatgttgtacccatcatagccaattatcctgacttagtttgcatg-ttaccagTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGCAGATTTTGTGGGCGAGGTTTTTGGAAATTTATCTTCGTTCAGTCATATT
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gttttaacttcatccattttgtgggaaaaccttatcttgttgtgctatcatttactaaagatttatttgatgcaacatt-ctaattttggt--tttggggggtttggttaccagTGAAGAGAAAGGAACCCTGGATGAGTCAGACCGTTTCATGATGGATCCAGCTAGTTTTGCATCAGAATTTGCAATAAATTGGTCTCTACCTAGTCACATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86427881|gb|CI072978.1|CI072978EST: TCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCTAG TGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGC
genomic: TCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCTAGgtgattattc ... atgttaccagTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taccatgttgtacccatcatagccaattatcctgacttagtttgcatgttaccagTGAAAACAAAGGGACCTTGGATGAGTCAGACCGTTTCCTCATGAACCCAGCAGATTTTGTGGGCGAGGTTTTTGGAAATTTATCTTCGTTCAGTCATATT
tcctgac putative branch site (score: 2)
aattat TA-rich tract