1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaccaacgttctgatattctattcgtttctatgatgttaattcactctgatattttcgttcctgattaggacattcagGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCACATTTTATTACGACAACTTCTTGAAGATACATATGGGATGGCTGGTCAT
species | Oryza sativa |
transcript | LOC_Os01g33684.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATNACATAGAGTATAAG GAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCAEST: gi|86513442|gb|CI156075.1|CI156075
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... ggacattcagGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCA
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTEST: gi|88221089|gb|CI221045.1|CI221045
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... ggacattcagGA-A---A--A---TCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
EST: GGCTGAAGAAGTGGTGCGAATGGCATGACATAGGGTATAAGGACATTCAG GAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCEST: gi|88217276|gb|CI217125.1|CI217125
genomic: GGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTAT------A---AGgtaaaccaac ... ggacattcagGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACC
EST: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAG GAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCAEST: gi|88457115|gb|CI531714.1|CI531714
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... ggacattcagGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCA
EST: GTTGTCCGAGGCTGAAGAANTGGTGCGAATGGCATGACATAGAGTATAAG GAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCAEST: gi|86521641|gb|CI161847.1|CI161847
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... ggacattcagGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCA
EST: GTTGTCCGAGGCTGAAGGAGTGGTGCGAATGGCATGACATAGAGTATAAG GACATTCAGGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
genomic: GTTGTCCGAGGCTGAAGAAGTGGTGCGAATGGCATGACATAGAGTATAAGgtaaaccaac ... ggacattcagGA-A---A--A---TCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGT
cgtttctatgatgttaattcactctgatattttcgttcctgattaggacattcagGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCACATTTTATTACGACAACTTCTTGAAGATACATATGGGATGGCTGGTCAT
tcctgat putative branch site (score: 3)
atgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccaacgttctgatattctattcgtttctatgatgttaattcactctgatattttcgttcctgattaggacattcagGAAAATCCAGAAGATTCATATGGGAAGCTGTGATACTTTTGTAATTGACCACATTTTATTACGACAACTTCTTGAAGATACATATGGGATGGCTGGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA