1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatattctcacaatctcactcccccaacttaagcatccaaggagaagaatggcctcctctgaatcaacatgaaatttttacttgcttttgcagGATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTATTGTTGGGAAAGGAGACAAATGGTGAATGGTGAAATGATTCAGATGGCT
species | Oryza sativa |
transcript | LOC_Os01g25530.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGAGACGCTTGATGACGATGAGGTGGTCAGCAACCTCAACTGCCGTCCG GATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTAEST: gi|58665569|gb|CK054255.1|CK054255
genomic: CTGAGACGCTTGATGACGATGAGGTGGTCAGCAACCTCAACTGCCGTCCGgtatattctc ... gcttttgcagGATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTA
EST: CTGAGACGCTTGATGACGATGAGGTGGTCAGCAACCTCAACTGCCGTCCG GATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTAEST: gi|89172108|gb|CI721167.1|CI721167
genomic: CTGAGACGCTTGATGACGATGAGGTGGTCAGCAACCTCAACTGCCGTCCGgtatattctc ... gcttttgcagGATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTA
EST: CTGAGACGCTTGATGACGATGAGGTGGTCAGCAACCTCAACTGCCGTCCG GATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAAC---EST: gi|29679997|gb|CB676272.1|CB676272
genomic: CTGAGACGCTTGATGACGATGAGGTGGTCAGCAACCTCAACTGCCGTCCGgtatattctc ... gcttttgcagGATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTA
EST: CTGAGACGCTTGATGACGATGAGGTGGTCAGCAACCTCAACTGCCGTCCG TATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTA
genomic: CTGAGACGCTTGATGACGATGAGGTGGTCAGCAACCTCAACTGCCGTCCGgtatattctc ... gcttttgcagGATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTA
aaggagaagaatggcctcctctgaatcaacatgaaatttttacttgcttttgcagGATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTATTGTTGGGAAAGGAGACAAATGGTGAATGGTGAAATGATTCAGATGGCT
tttttacttgctttt CT-rich tract
aacatgaaattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattctcacaatctcactcccccaacttaagcatccaaggagaagaatggcctcctctgaatcaacatgaaatttttacttgcttttgcagGATTCATGAAGTGACGCTAAAAAGTTTTCACTTGTAAATCAACACAACTTATTGTTGGGAAAGGAGACAAATGGTGAATGGTGAAATGATTCAGATGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG