1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggctacccaagcatgttgacatctgtgcctggcatataagacattgcactctgcttgaacttttaactatggctctgagtttattgtggttatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGGTGTCAGGTCAACAATTCAGTCAGCATTCGGTGTCTAAATAGAGGCGCC
species | Oryza sativa |
transcript | LOC_Os01g22870.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGEST: gi|58684863|gb|CK073550.1|CK073550
genomic: AGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
EST: CTTGAGTCTCAGCATAGCCAACATTGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGEST: gi|33680657|gb|CF308896.1|CF308896
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
EST: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGEST: gi|29678098|gb|CB674373.1|CB674373
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
EST: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGEST: gi|33680658|gb|CF308897.1|CF308897
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
EST: CTTGAGTCTCAGCATAGCAAACAATGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGEST: gi|44679016|gb|CR292450.1|CR292450
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
EST: CTTGAGTCTCAGCATAGCAAACATTGTTGGGTTCACCAAGTGCAACAAAG ATGTCAAGAAAAAAGTTGCAGATTGGACTAGEST: gi|29678099|gb|CB674374.1|CB674374
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAG
EST: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGEST: gi|27920913|gb|CB096721.1|CB096721
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
EST: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGEST: gi|86887714|gb|CI311847.1|CI311847
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
EST: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGEST: gi|218478253|gb|FG951116.1|FG951116
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
EST: TTGAGTCTCAGCATAGCAAACAATTGTAGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCEST: gi|86419153|gb|CI053954.1|CI053954
genomic: TTGAGTCTCAGCATAGCAAACA-TTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCC
EST: CTTGAGTCTCAGCATAGCCAAC-TTGTTGGCTTCACCAAGTGCAACAAAG ATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
genomic: CTTGAGTCTCAGCATAGCAAACATTGTTGGCTTCACCAAGTGCAACAAAGgtgagagact ... tatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTG
gcactctgcttgaacttttaactatggctctgagtttattgtggttatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGGTGTCAGGTCAACAATTCAGTCAGCATTCGGTGTCTAAATAGAGGCGCC
ttttaac putative branch site (score: 25)
ttatttttc putative PPT
ttttaactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctacccaagcatgttgacatctgtgcctggcatataagacattgcactctgcttgaacttttaactatggctctgagtttattgtggttatttttcagATGCCAAGAAAAACGTTGCAGATTGGACTAGAACTACGCTCCTATCATCTGGTGTCAGGTCAACAATTCAGTCAGCATTCGGTGTCTAAATAGAGGCGCC
- - - - - -catgttg
- - - - - - - - - - - - gtgcctg
- - - - - - - - - - - - - - - - - - - - -cattgca