1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcatatatctacattgttatgttagtacaactttacaggtcaaaacctaatgacttctttggaacgctaacagAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAG
species | Oryza sativa |
transcript | LOC_Os01g07090.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGT AATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGEST: gi|29685959|gb|CB682234.1|CB682234
genomic: CTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTgtaagcatat ... acgctaacagAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGG
EST: CTTCTACTGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGT AATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGEST: gi|29641053|gb|CB646060.1|CB646060
genomic: CTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTgtaagcatat ... acgctaacagAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGG
EST: CTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGT AATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGCGGG
genomic: CTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTgtaagcatat ... acgctaacagAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGG
atgttagtacaactttacaggtcaaaacctaatgacttctttggaacgctaacagAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAG
acctaat putative branch site (score: 27)
aacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatatatctacattgttatgttagtacaactttacaggtcaaaacctaatgacttctttggaacgctaacagAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT