1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgagataaaagaaatacaaccagcacaccagaacagttcggtctatgtgaacataattcctgacattgcaagtgttgatcatgttgttgattctatgtagAACCCAGTGAAACCTCTGGGGAAAGAGCCCACTGAACCGATTGATGTTGTGCTACATAGCGAGATTCGCTCTGTCGGTCGCGCCAGGTTCGATCACCAA
species | Oryza sativa |
transcript | LOC_Os12g38790.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGCAACCCGGTCGCGCAAGGTCTCCCATGGACCACTGATGTACCTGAG AACCCAGTGAAACCTCTGGGGAAAGAGCCCACTGAACCGATTGATGTTGTG
genomic: TGCGCAACCCGGTCGCGCAAGGTCTCCCATGGACCACTGATGTACCTGAGgtacattaca ... ttctatgtagAACCCAGTGAAACCTCTGGGGAAAGAGCCCACTGAACCGATTGATGTTGTG
tgtgaacataattcctgacattgcaagtgttgatcatgttgttgattctatgtagAACCCAGTGAAACCTCTGGGGAAAGAGCCCACTGAACCGATTGATGTTGTGCTACATAGCGAGATTCGCTCTGTCGGTCGCGCCAGGTTCGATCACCAA
acataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagataaaagaaatacaaccagcacaccagaacagttcggtctatgtgaacataattcctgacattgcaagtgttgatcatgttgttgattctatgtagAACCCAGTGAAACCTCTGGGGAAAGAGCCCACTGAACCGATTGATGTTGTGCTACATAGCGAGATTCGCTCTGTCGGTCGCGCCAGGTTCGATCACCAA
- - - -aaagaaa
- - - - - - - - - -ccagcac
- - - - - - - - - - - - - accagaa
- - - - - - - - - - - - - - - - - - - - - - - - gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttg