1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tctgttttgtttgttataaactgttgcatacacattttacttttaggctatttgttggaacttgatacagtaacatagtcttttgtaattcatcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAATCCGTCCTACAAGTGAGACTGTCATGTATCCATACTTCTCCAAATGGA
species | Oryza sativa |
transcript | LOC_Os12g25710.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAG GTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAEST: gi|58690340|gb|CK079027.1|CK079027
genomic: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAGgtgtgtattt ... catcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCA
EST: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAG GTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAEST: gi|88312613|gb|CI587521.1|CI587521
genomic: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAGgtgtgtattt ... catcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCA
EST: AGAATGTCCTACAGAAGGAGAAAGACCACATTGATGGCTTTGCACCAGAG GTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAEST: gi|12404672|gb|AU166273.1|AU166273
genomic: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAGgtgtgtattt ... catcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCA
EST: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAG GTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAEST: gi|58674015|gb|CK062701.1|CK062701
genomic: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAGgtgtgtattt ... catcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCA
EST: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAG GTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAEST: gi|29635079|gb|CB640088.1|CB640088
genomic: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAGgtgtgtattt ... catcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCA
EST: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAAAG GTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAEST: gi|58652586|gb|CK041266.1|CK041266
genomic: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAGgtgtgtattt ... catcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCA
EST: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAG GTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCA
genomic: AGAATGTCCTACAGAAGGAGAAAGACCACATTGAGGGCTTTGCACCAGAGgtgtgtattt ... catcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCA
ggctatttgttggaacttgatacagtaacatagtcttttgtaattcatcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAATCCGTCCTACAAGTGAGACTGTCATGTATCCATACTTCTCCAAATGGA
cagtaac putative branch site (score: 84)
ttcatctt putative PPT
ttttgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgttttgtttgttataaactgttgcatacacattttacttttaggctatttgttggaacttgatacagtaacatagtcttttgtaattcatcttgcagGTAGCATGGGTCACTAAATCAGGAAAATCTGATCTGGAAGCTCCTATCGCAATCCGTCCTACAAGTGAGACTGTCATGTATCCATACTTCTCCAAATGGA
tctgttt
- - - -tgtttgt
- - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataca