1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagtggaattttggtccttgcatgctagtactagattatatggattgtttacttccaagttcttaacaagttacttgctctgcagACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCTACTAGTGTG
species | Oryza sativa |
transcript | LOC_Os12g06335.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTGCTGAGATGAACAATCAGTTCAGAGCTGGCATTAAG ACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCTEST: gi|58654584|gb|CK043264.1|CK043264
genomic: GTTGCTGCTGAGATGAACAATCAGTTCAGAGCTGGCATTAAGgttagtggaa ... tgctctgcagACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCT
EST: GTTGCTGCTGAGATGAACAATCAGTTCAGAGCTGGCATTAAG ACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCTEST: gi|58656374|gb|CK045054.1|CK045054
genomic: GTTGCTGCTGAGATGAACAATCAGTTCAGAGCTGGCATTAAGgttagtggaa ... tgctctgcagACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCT
EST: GTTGCTGCTGAGATGAACAATCAGTTCAGAGCTGGCATTAAG ACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCT
genomic: GTTGCTGCTGAGATGAACAATCAGTTCAGAGCTGGCATTAAGgttagtggaa ... tgctctgcagACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCT
ctagattatatggattgtttacttccaagttcttaacaagttacttgctctgcagACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCTACTAGTGTG
tcttaac putative branch site (score: 2)
cttgctct putative PPT
attgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtggaattttggtccttgcatgctagtactagattatatggattgtttacttccaagttcttaacaagttacttgctctgcagACCATTGCAATTATACCTGTGTTACCACGTGGTGTGCTGCAGCTAGGCTCTACTAGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT