1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaatacgatgagtttgtcctcagtgatgtatgccaaagttaactgtaactgtttatcattctaccagttcctttcctgagccaatttccttgtactgcagCTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA
species | Oryza sativa |
transcript | LOC_Os11g34300.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGEST: gi|9865404|gb|AU101154.1|AU101154
genomic: AACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCT--G---Ggtaaggtatt ... tgtact
EST: AACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGEST: gi|58679417|gb|CK068104.1|CK068104
genomic: AACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCT--G---Ggtaaggtatt ... tgtact
EST: CTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGEST: gi|89173985|gb|CI041878.1|CI041878
genomic: CTTGTTGATGATTGGGAGTTTGTCACGCAGCT--G---Ggtaaggtatt ... tgtact
EST: CGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGEST: gi|29665212|gb|CB661487.1|CB661487
genomic: CGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCT--G---Ggtaaggtatt ... tgtact
EST: AACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGG CTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTAC
genomic: AACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGgtaaggtatt ... tgtactgcagCTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTAC
taactgtttatcattctaccagttcctttcctgagccaatttccttgtactgcagCTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA
ctgtaac putative branch site (score: 3)
tttccttgt putative PPT
tttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatacgatgagtttgtcctcagtgatgtatgccaaagttaactgtaactgtttatcattctaccagttcctttcctgagccaatttccttgtactgcagCTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTACTTGGAGCACCGGACAAAGAAGGATAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG