1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tagctcaccagttcacttttacctaaactctatatatgagctgatttcctgtcaaagatcaggatagaaaagcacaactcactttaccattctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
species | Oryza sativa |
transcript | LOC_Os11g33240.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCTTAAGTCCCAGCTGCAGGAATCGATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACEST: gi|88424666|gb|CI606465.1|CI606465
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
EST: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAATEST: gi|117245193|gb|CT843395.1|CT843395
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAAT
EST: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACEST: gi|88391585|gb|CI600774.1|CI600774
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
EST: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAG GATCGCTTAAAGAAAEST: gi|88370889|gb|CI595001.1|CI595001
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAA
EST: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAG GATCGCTTAAAGEST: gi|88729100|gb|CI752610.1|CI752610
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAG
EST: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAG GATNGNTTAAAGAAAEST: gi|88422482|gb|CI571464.1|CI571464
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAA
EST: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAAEST: gi|33793807|gb|CF322790.1|CF322790
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAA
EST: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACEST: gi|88352215|gb|CI613866.1|CI613866
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
EST: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTEST: gi|88315947|gb|CI618823.1|CI618823
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGT
EST: GATCTTACCTCCCAGCTGCAGGAATTGATTCCCGAGCAAGAG GATCGCTTAAAGAAACTTAAATCAGAAGATGGGAAGGEST: gi|86904765|gb|CI310558.1|CI310558
genomic: GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGG
EST: GATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
genomic: GATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
ttcctgtcaaagatcaggatagaaaagcacaactcactttaccattctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
aactcac putative branch site (score: 20)
ccattct putative PPT
atagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctcaccagttcacttttacctaaactctatatatgagctgatttcctgtcaaagatcaggatagaaaagcacaactcactttaccattctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAACATAACTGTTGATATG
- - -caccagt
- - - - - - - - - - acctaaa
- - - - - - - - - - - - - - - - - - tgagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacaac