1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAATGGTGGTACCATTGCCGATAAGGTGGACTATGGATACAAGT
species | Oryza sativa |
transcript | LOC_Os11g06750.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|33795571|gb|CF323655.1|CF323655
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGEST: gi|117216971|gb|CT845288.1|CT845288
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAG
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58679138|gb|CK067825.1|CK067825
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58604279|gb|CK014807.1|CK014807
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAEST: gi|58653344|gb|CK042024.1|CK042024
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAA
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGEST: gi|218489448|gb|FG954211.1|FG954211
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGG
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58676606|gb|CK065293.1|CK065293
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGACAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58678501|gb|CK067188.1|CK067188
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGACAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGEST: gi|218490273|gb|FG964408.1|FG964408
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGG
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|218482116|gb|FG962264.1|FG962264
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCGCACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|218493270|gb|FG968723.1|FG968723
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|33794277|gb|CF323026.1|CF323026
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|86907296|gb|CI292852.1|CI292852
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|218481334|gb|FG969732.1|FG969732
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAGGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|2312602|gb|C28757.1|C28757
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|29689626|gb|CB685901.1|CB685901
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|27554042|gb|CA997942.1|CA997942
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAC ATTATGAAAATGAACGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58677758|gb|CK066445.1|CK066445
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|218502819|gb|FG970328.1|FG970328
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58693843|gb|CK082530.1|CK082530
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|218494740|gb|FG970602.1|FG970602
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGGAGATEST: gi|218491785|gb|FG958621.1|FG958621
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGG-AGAT
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCCTGGAGATCEST: gi|58687071|gb|CK075758.1|CK075758
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58590957|gb|CF989265.1|CF989265
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58677595|gb|CK066282.1|CK066282
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACEST: gi|33797152|gb|CF324441.1|CF324441
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCAC
EST: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAG ATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTATGCTTCTGTTGTCCGTGTGATCGTGCACACTCAGgtcagtaacc ... tgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
accatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAATGGTGGTACCATTGCCGATAAGGTGGACTATGGATACAAGT
ttctaaa putative branch site (score: 251)
tctttat CT-rich tract
attctaaatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaacctactgttattttactatcttgtattttgagcccttctattcagttaattggatggtaaccatgtgctgtaaattgtttgttcattctcattctaaatctttatgtgcttcagATTAGGAAAATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAATGGTGGTACCATTGCCGATAAGGTGGACTATGGATACAAGT
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