1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...gtcctttttaccgattgacttgaagattctgaatttgagtccaacagtacatttataccctgacacagcatacaaataaccaatggctttctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGCCCCCTGAAAATTCAGTTACTTCAACTGGTGAAGAACAGCTTAGTGCTGC
species | Oryza sativa |
transcript | LOC_Os08g25060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAG CTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGCEST: gi|88207963|gb|CI207812.1|CI207812
genomic: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAGgtaaagtgaa ... ctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGC
EST: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAG CTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGCEST: gi|5004205|gb|AU069354.1|AU069354
genomic: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAGgtaaagtgaa ... ctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGC
EST: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAG CTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGCEST: gi|13919362|gb|AU183605.1|AU183605
genomic: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAGgtaaagtgaa ... ctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGC
EST: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAG CTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGCEST: gi|29631299|gb|CB636308.1|CB636308
genomic: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAGgtaaagtgaa ... ctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGC
EST: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAG CTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGCEST: gi|33678004|gb|CF306243.1|CF306243
genomic: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAGgtaaagtgaa ... ctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGC
EST: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAG CTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGC
genomic: GTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAGgtaaagtgaa ... ctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGC
agtacatttataccctgacacagcatacaaataaccaatggctttctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGCCCCCTGAAAATTCAGTTACTTCAACTGGTGAAGAACAGCTTAGTGCTGC
aaataac putative branch site (score: 19)
tggctttctcttttc putative PPT
atacaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctttttaccgattgacttgaagattctgaatttgagtccaacagtacatttataccctgacacagcatacaaataaccaatggctttctcttttcagCTAAAGTTTTAGGTAAGCAACAAGGTACGATACCGCCTAAACCAAATGTGCCCCCTGAAAATTCAGTTACTTCAACTGGTGAAGAACAGCTTAGTGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - -tgacttg
- - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -taccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaccaa