1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtactcatattttgggttgctaaaatgctatctttctataatctagatgtgatacacaagtcaacttttcactgttttgatcattcatatgctgtgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGGAGGTTCCTTTGCCAAAG
species | Oryza sativa |
transcript | LOC_Os07g47580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAEST: gi|58689868|gb|CK078555.1|CK078555
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGA
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|33653812|gb|CF276426.1|CF276426
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCACATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATNGEST: gi|88395389|gb|CI611306.1|CI611306
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAAT-G
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88302583|gb|CI668429.1|CI668429
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|33688902|gb|CF317141.1|CF317141
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCCGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAANTGEST: gi|218487556|gb|FG947559.1|FG947559
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAA-TG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88394705|gb|CI622579.1|CI622579
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|218486392|gb|FG950823.1|FG950823
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|12622982|gb|AU173195.1|AU173195
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|218488945|gb|FG960620.1|FG960620
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|29624519|gb|CB629530.1|CB629530
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88351380|gb|CI627396.1|CI627396
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGGCAAAAGAGGATGGAAAAGGCTGGCAAATGEST: gi|29662524|gb|CB658799.1|CB658799
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAG-CAAAAGAGGATGGAAAAGGCTGGCAAATG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|218483549|gb|FG959691.1|FG959691
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|29668015|gb|CB664290.1|CB664290
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|33813020|gb|CF332400.1|CF332400
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCEST: gi|87011090|gb|CI287767.1|CI287767
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGC
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAEST: gi|218489207|gb|FG951304.1|FG951304
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTA
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|29668016|gb|CB664291.1|CB664291
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|218490089|gb|FG957774.1|FG957774
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|33814059|gb|CF332914.1|CF332914
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAA-TGGEST: gi|58681353|gb|CK070040.1|CK070040
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88333766|gb|CI643798.1|CI643798
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88570881|gb|CI662254.1|CI662254
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGEST: gi|33658076|gb|CF280690.1|CF280690
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88330377|gb|CI633584.1|CI633584
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGAEST: gi|88364720|gb|CI612535.1|CI612535
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGA
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|33657881|gb|CF280495.1|CF280495
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|86887864|gb|CI297975.1|CI297975
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTEST: gi|33794028|gb|CF322904.1|CF322904
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATT
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88851570|gb|CI671010.1|CI671010
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACCACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGEST: gi|87022128|gb|CI259200.1|CI259200
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAAC-ACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATG
EST: CAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|218480798|gb|FG956053.1|FG956053
genomic: CAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|38469043|gb|CF953174.1|CF953174
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|33692111|gb|CF320350.1|CF320350
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88399306|gb|CI618496.1|CI618496
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAACTTAC-CAAAAGAGGATGGAAAAGGCTGGCAAATGEST: gi|58678013|gb|CK066700.1|CK066700
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAA-TTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|33809375|gb|CF330567.1|CF330567
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|313079531|gb|HO213089.1|HO213089
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCGGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGEST: gi|88330904|gb|CI638312.1|CI638312
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGG
EST: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAG GTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCT
genomic: GTGCTCTTCCTCCATATCTGCTGGACCGTGATCAGACACAACGTGCCAAGgtaagtactc ... tgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCT
tgatacacaagtcaacttttcactgttttgatcattcatatgctgtgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGGAGGTTCCTTTGCCAAAG
ttttgat putative branch site (score: 108)
attcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtactcatattttgggttgctaaaatgctatctttctataatctagatgtgatacacaagtcaacttttcactgttttgatcattcatatgctgtgaaacatagGTTCTCAGCAACACAATTAAGCAAAAGAGGATGGAAAAGGCTGGCAAATGGGAGGTTCCTTTGCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA