1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaccataagttttaacctgatgtggaatacttgtttcagttcttttcgtagctgctgttcaccttcacaatttctgcagacttcagagtgctatatgcttctattttatgtgtaacaagtacttttatgggcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
species | Oryza sativa |
transcript | LOC_Os07g12830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAG GAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCAEST: gi|33680256|gb|CF308495.1|CF308495
genomic: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataa ... gcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
EST: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAG GGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCEST: gi|88491319|gb|CI428591.1|CI428591
genomic: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataa ... gcatttgcagG-AGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTC
EST: CAACATTGCTCCGTACATGAAATTTCATCCGGGAG GAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCAEST: gi|86420762|gb|CI056751.1|CI056751
genomic: CAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataa ... gcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
EST: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAG GAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCAEST: gi|3762892|gb|AU029644.1|AU029644
genomic: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataa ... gcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
EST: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAG GAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCAEST: gi|88990983|gb|CI108370.1|CI108370
genomic: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataa ... gcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
EST: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAG GAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCAEST: gi|88831337|gb|CI082147.1|CI082147
genomic: GAAAGGTCGTGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataa ... gcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
EST: TGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAG GAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
genomic: TGTGTACAACATTGCTCCGTACATGAAATTTCATCCGGGAGgtaaccataa ... gcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
gagtgctatatgcttctattttatgtgtaacaagtacttttatgggcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
gtgtaac putative branch site (score: 3)
tattttatgtgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccataagttttaacctgatgtggaatacttgtttcagttcttttcgtagctgctgttcaccttcacaatttctgcagacttcagagtgctatatgcttctattttatgtgtaacaagtacttttatgggcatttgcagGAGTTGATATGCTTATGAAGGCTGCTGGAAAAGACTCGACCGCTCTGTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA