1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagattacacatacaaaattacctgataatatatagtaattgccacaattacctaatgcatacatagttctacaaacatcttagttcagatcagatgcatcatcacattgttactaactttgcaccaatgggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG
species | Oryza sativa |
transcript | LOC_Os07g03770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGEST: gi|88243617|gb|CI244014.1|CI244014
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
EST: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGEST: gi|86505842|gb|CI148475.1|CI148475
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
EST: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGEST: gi|86503254|gb|CI145887.1|CI145887
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
EST: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGCCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGEST: gi|27578312|gb|CB001007.1|CB001007
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
EST: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGAEST: gi|86505130|gb|CI147763.1|CI147763
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGA
EST: AGAAGCTGCTTCACTGGTGGGANCTGCACTACAAGTGCCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGEST: gi|86490553|gb|CI133186.1|CI133186
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
EST: GCACTACAAGTGGCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGEST: gi|86595166|gb|CI260405.1|CI260405
genomic: GCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
EST: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGEST: gi|88434761|gb|CI548958.1|CI548958
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
EST: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGEST: gi|87015963|gb|CI279715.1|CI279715
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
EST: AGAATCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCA GAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
genomic: AGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAgtaagattac ... ggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAG
tcagatcagatgcatcatcacattgttactaactttgcaccaatgggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG
tactaac putative branch site (score: 4)
attgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattacacatacaaaattacctgataatatatagtaattgccacaattacctaatgcatacatagttctacaaacatcttagttcagatcagatgcatcatcacattgttactaactttgcaccaatgggatgagtagGAGACGGAGAAGATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG